>PF17239 (553 residues) STFDKLVETLSGEEAQQMLAKIKQAINTNEELQIAPSSTKSEILKSDFTESRLENEPFLF RLWLTLKAFFKSLPVESLYETSLLNRLGRALHAKYKDYINIRENSFKKGFYDGLKSLRKT QVFFDSLLTAYDNDKGDFYLLLSSFIAPEAHKKLMEESDPFTVQIGTESSANLRSDFLRR IDNAFSVLTDDNKSQLYRAAQAIEWMKSFCDIPIEKMLLHFTISSDTEAVCPVTLVQSEL EKLACVLCYLKQIPEPVLQGLFFLKAQNKFENGTSDNSNAAVEFLEQAAIALSAVKKFAE AIPIVDFTRFCLKDLHWHPYSVAGAEEWFILFKNAWKKRFNEKWSLWTAEQKRFALKGQM LALLKKDHFEEMQYKPWEDIWYPLVFKRELSFVFLKNFFNSLYPSSIQPPLKIILVEGSF YRRENLAEFSEAFNALGQMKLKIAGFEEKLAPAGEIGGGFNAQKKEPVATIKNKETLETL IRTVDSEASILIESALNAFKSIDTILTGIVGGSKASIYATLVNWGAIQGNSNSAFRKNVE EAKRRLQTAAGLL |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 | | | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | STFDKLVETLSGEEAQQMLAKIKQAINTNEELQIAPSSTKSEILKSDFTESRLENEPFLFRLWLTLKAFFKSLPVESLYETSLLNRLGRALHAKYKDYINIRENSFKKGFYDGLKSLRKTQVFFDSLLTAYDNDKGDFYLLLSSFIAPEAHKKLMEESDPFTVQIGTESSANLRSDFLRRIDNAFSVLTDDNKSQLYRAAQAIEWMKSFCDIPIEKMLLHFTISSDTEAVCPVTLVQSELEKLACVLCYLKQIPEPVLQGLFFLKAQNKFENGTSDNSNAAVEFLEQAAIALSAVKKFAEAIPIVDFTRFCLKDLHWHPYSVAGAEEWFILFKNAWKKRFNEKWSLWTAEQKRFALKGQMLALLKKDHFEEMQYKPWEDIWYPLVFKRELSFVFLKNFFNSLYPSSIQPPLKIILVEGSFYRRENLAEFSEAFNALGQMKLKIAGFEEKLAPAGEIGGGFNAQKKEPVATIKNKETLETLIRTVDSEASILIESALNAFKSIDTILTGIVGGSKASIYATLVNWGAIQGNSNSAFRKNVEEAKRRLQTAAGLL | |||||||||||||||||||
1 | 4iggA | 0.11 | 0.10 | 0.94 | 1.48 | FFAS-3D | DLMKAAAGEFSSVKRGNMVRAARALLSAVTRLLI--------LADMADVYKLLV---QLKVVEDGILKLRNAGNEQDLGIKPEVDKLNIMAAKRQQ---ELKDVGHRDQMAAARGILQKNVPILYTASQACLQHPKANRDLIYK-QLQQAVTGISNAAQATIVDPLSFSEERFRPSLEERLESIISCTRDDRRERIVAECNAVRQALQ-------DLLSEYMGNAGRKERSAIDKMTKKTRDLRRQLRKAVLETNVPLLVLIEAAKNGNEKE-VKEYAQVFREHANKVRMSASQLEALCPQ--VINAALALAAKP-----QSKLAQENMDLFKEQWEKQVRVKCVIALQEKDVDGLDRTAGAIRG--RAARVIHVVTSEMDNYEPGVYTEKVLEATKLLSNTVMPRFTEQVEAAVLSSDPAQPMDENEFIDASRLVYDGIRDIRKAVLMIRTPGQSARAIMAQQEQKAKIAEQVASFQEEKSKLDAEVSKWIIVLAKQMCMIMMEMTDFTRGKGKNTSDVISAAKKIDHCPDSACKQDLLAYLQRIALYCHQL | |||||||||||||
2 | 3w3vA | 0.10 | 0.08 | 0.86 | 1.31 | CNFpred | RTLLQIVQAFIRSVAEKALSEEW--------------------------------ENNIEYLLTFLAEQAAFS--DTTVAALSAVLFRKLALKAPITHIRKELAQIRSSLLKGFLSRHKLSDAIAECVQDDLPAWPELLQALIESLFRESSFRILTTVPYLITAV-------DINSILPIFQSGFTDA---SDNVKIAAVTAFVGYFKQL-ILLPSLLNSLPRFLDDGKDDALASVFESLIELVELAKLFKDMFDQIIQFTDMVIKNKDL------EPPARTTALELLTVFSENAPQMCKQNYGQTLVMVTLIMMTEVSIDDDDAAEWI-VTYDHARQALKRVALKLGGEYLAAPLFQYLQQMITSTEWRER-------------FAAMMALSSAAKGCADVLIGEIPKILDMVIPLINDPHPRVQYGCCNVLGQISTKFFIQRTAHDRIL------PALISKLT----SECTSRVQTHAAAALVNFSEFSKDILEPYLDSLLTNLLVLLQSNKLVQEQALTTIAFIAEAAKNKFIKYYDTLMPLLLNVLKV- | |||||||||||||
3 | 4iggA | 0.06 | 0.04 | 0.78 | 0.78 | DisCoVER | -GILKLRLGYLKPEVDKLNIMAAKRQLKDVGHRDQ-------------MA-AA--RGILQKNVPILYTASQANRDLIYQLQQAVTGISNAA--QATASD--DASQHQG-----------G--GG-GELAYALRLESIISGAMADCTRERIVAECNAVALQDLLDALNSAIDKMTKKTR-DLRRQLRKA------VMDHVSDSFLET--N--VPLLVLIEAAKNG------N-EKEVKEYAQVFREHANKLIEVANLAC--S--IS--N---------------NE-EGVKLVRMSASQLE-ALCPQVINAALALAAKPWEKQVLTDAVDDITTAGAIRGRAARVIHVVTSEMD-NY--EPGVYTVLMIRTPGQAMQKAKIAEQVMTFTRGDVISAAKKIAEAGS-RMDKLGRTIA--DHCPDSACKQDLLAYLQRIALYCHQLNICSKVK-----AE--V------------QNLGGELVV-SGVDSAMSLIQAAKNLMNAV-VQT--VK-------A-SYVASTKYQKSQGM-AS-LN--L--PA-VS-WK- | |||||||||||||
4 | 6rc9A1 | 0.05 | 0.03 | 0.62 | 0.67 | DEthreader | ----------------------SVVYYEQLQRGLGFGTALSPTPWRPW------------NY--SWRTPKWTTGFFNPRRHPEWFGALPFEAYFANIGNL----NGHVTKSAHTAPL---S-------------------IG-VFRV-RYNAT------------------------------ATVTGW------LL-FSGMVNKQTDGLK----------A-------------AGAKFVGRELVLA--------------NWSNKLTDQ----LSAD-FVN-ENAY-QPN-----------FA-AI------------LAAL-D-VKYGENEFLT-STLSRFSTGFNLVLDQVLDYVYGNNHRSFLPTAGLTPTAFTNKNNAQQVNGLLNPALVETYFGPGLGLDASQIPWAAFVWDLKVWADQAQSDSLPEHPNAL--AF-QV--SV-----VEASAYKPNSSPYL---HL-VKPKKVTQSDKL---LK-LL-DPN--V----RT--RQSFGTDSQQPQSLK-TTTPVFGNTGNDGVGRL---------- | |||||||||||||
5 | 4iggA | 0.07 | 0.07 | 1.00 | 0.64 | CEthreader | DGILKLRNAGNEQDLGIQYKALKPEVDKLNIMAAKRQQELKDVGHRDQMAAARGILQKNVPILYTASQACLQHPDVAAYKANRDLIYKQLQQAVTGISNAAQATASDDASQHQGGGGGELAYALNNFDKQIIVDPLSFSEERFRPSLEERLESIISGAALMADSSCRERIVAECNAVRQALQDLLSEYSDALNSAIDKMTKKTRDLRRQLRAVMDHVSDSFLETNVPLLVLIEAAKNGNEKEVKEYAQVFREHANKLIEVANLACSISNNEEGVKLVRMSASQLEALCPQVINAALALAAKPQNMDLFKEQWEKQVRVLTDAVDDITSIDDFLAVSENHILEDVNKCVIALQDVDGLDRTAGAIRGARVIHVVTSEMDNYEPGVYTEKVLEATKLLSNTVMPRFTEQVEAAVEALSSDPAQPMDENEFIDASRLVYDGIRDIRKAVLMIRTPGQSARAIMAQLPQEQKAKIAEQVASFQEEKSKLDAEVSKWDDIIVLAKQMCMIMMEMTDFTRGKGPLVISAAKKIAEAGSRTIADHCPACKQDLLAYLQRI | |||||||||||||
6 | 4iggA | 0.08 | 0.07 | 0.84 | 0.77 | EigenThreader | AVTRLLILADMADVYKLLVQLKVVEDGILKLRNAGNEQDLGIQYKALKPEVDKLNIMAAKRQQELGHRDQMAAARGILQKNVPILYTASQACLQHP-----DVAAYKANRDLIYKQLQQAVTGISNAAQSLEERLESIISGAALMADSNAVRQALQDLLSEYMGNAGRKER---SDALNSAIDKMTKKTRDLRRQLRKAVMDHVSDSFLE-TNVPLLVLIEAAKNGN-----EKEVKEYAQVFREHANKL----IEVANLACSI---------SNNEEGVKLVRMSASQLEALCPQVI------NAALALAAKP----------QSKLAQENMDLFKEQWEKQVRVLTDAVDDIAVSENHILEDVNKCVIALQEKD------------VDGLDRTAGAIRGRAARVIHVVTSEMDNYEP--GVYTEKVLEATKLLSNTFTEQVEAAVEALSSDP------------AQPMD-------------ENEFIDASRLVYDGIRDIRKAVLM----IRTPGQ----SARAIMAQLPQEQKAKIAEQVASFQEEKSKL | |||||||||||||
7 | 1vt4I | 0.14 | 0.11 | 0.78 | 0.53 | HHpred | -----------------------------------------------TGEHQYQY-----------------KDILSVFEDAFVDNFCKDVQDMPKSILSKE--EIDHIIMSK-DAVSGTLRLFWTLLSKQEEVLRINYKFLMSP---------------IKTEQRQPS--------------MMTRMYIEQRDRLYNDNQVYLKLRQ----ALLELRPAKNVLIDLGSGKTWVALDVCLSYKVQCKMNLKNCNETVLEMLQKLLYIDPNWTSRSDHSSNIKLRIHSIQAELRRVTDFLSSMTLTPLLKYLDCRPQDLPREVTTNPRRL---SIIAESIRDATWDNWKHCDKLTTIIESSLNVLEP-----AEYRKMFDRLSVFPPSAHIPTLSLIWFDVIKSD--VMVVVNTISIPSIYVKLENEYALHRFYSHIGHHLKNIEHERMLFRMV-FLDFRFLEQKIRHDSTAWQLKFYKPYICDNDPKYERLVNAILDFLP---KIEENLI-CSKYTDLLRIALMAE----DEAIFEEAHKQVQRGGGG----- | |||||||||||||
8 | 5yfpC | 0.11 | 0.09 | 0.86 | 0.48 | MRFsearch | --LLEIHFLLTRDFQEQVVVMAKEATE----------------DAQRTVMKLFSRLSIISKFDKLLDGLTYDITAPRGYKHFLINGINNSISEMFGEMREKYVGDQKFDVLDNMDWIFNELIIVKEHIANCCPPHWNIFEVYFDQYYKELHSLITDLVES------EPETIIILDILDKTFQDTLKQIGDKEKETLFKDYLNLEWIGNLEKAEFDVFLERSTPPHSLLFLDGTKTCFQMFTQQVEVAAGT--NQAKILVGVVER------------FSDLLTKRQKNWISKISEIKKQINYGLVEYLIAVSN------------DQMKAADYAVAISSKYGKLVSKVYEKQITNHLEGTLDGFAE------------------------VAQCSSLGLITLM-FDDLRKPYQEIFS-KTWYMGSQAQQIADTLDEYLLDSVLFVNFIDNVI--GETIIKFLTALSFEEAMKRDFEIFYQLFVKVITQNFTVMEFFMDLSDSILDIWQKYLEVYWDSRIDLLVGILKCRKDVSSSERKKIVQQATEMLHEYRR- | |||||||||||||
9 | 5o9zG | 0.08 | 0.07 | 0.93 | 1.38 | FFAS-3D | AIYAALDKRMDKEEIEKYFSDLKRKLAEVTEEETHGGDINDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEDTAKAVVAQAVRHQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPEDARIMLSRAVEC------CPTSVELYENARKVLNKARENIPTITAAKLEEANGNTQMVEKI----IDRAITSLRANGVEINREQWIQDVATCQAVMRAVIGIGIEEEDRKHTWMEDADSCVAHNALECARAIYAYALQTRESLEALLQRAVAHCPWLMGAKSKWL--------AGDVPAARSILALAFQEIWLAAVKLESENDEYERARRLLAKARSSAPTARV------------------FMKSVKLEWVQDNIRAAQDLCEEAL-RHYEDFPKLWMMKGQIEEQKEMMEKAREAYNQGLKHSTPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLWLESVRLEKNIANTLMAKALQECPNSGILWSEAIFLEARPQRRTKSVDATKAREWFHRTVKI- | |||||||||||||
10 | 5ifeC | 0.09 | 0.08 | 0.91 | 0.90 | SPARKS-K | NQILPLLMTLEDQERHLLVKVIDRILYKLDDLVR----------------------PYVHKILVVIEPLLIDDYYARVEGREIISNLAKAMISTMRPDIDNMDEYVRNTTARAFAVVASALPSLLPFLKAVCKSKRHTGIKIVQQIAILMGCAILPHLREHGLVDEQ---QKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQGLAAFLKAIGYLIPLMDA------EYANYYTREVMLILIREQSPDEEMKKIVLKVVKQCGTDGVEANKTEILPPFFKHYRQLVDTTVELANKVGAAEIISRIVDDEAEQYGAADIDHKLEEQLIDGILYAFQENALGKRVKPYLPQICGTVLWRLNNKSAK----------------VRQQAADLISRTAVVMKEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNIKDLLPRLTPILKNRHEVGRIADRGAEYVSARMRICFELLELLKAIRRATVNTFGYIAKAIVCTTVAIAIVAETCSPFT--VLALMNEYRVPELNVQNGVLKSLSFLFEYIGEMG | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |