Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | VVGHGLHFAMAVAMATMAWPWATRLPTTGPVAFFLLATVWFAVMALRAAPTTAVRVRYGYHAIMMLATAWMYAVMSMPGPDMAAMKTPATSGAPIWFNAANWLGTVGFAGAGAFWILRRLFDRRRGAPRYSWLGDSVQAMMAGGMAVLFLAM |
1 | 2cmrA | 0.06 | 0.06 | 0.95 | 1.00 | DEthreader | | VQQQNNLLRAIEAQQHLLQLTVWEIYTSLIHSLIEESQNQQEKNEQELLGQSGIVQQQNNLLRAIEAQQHLLQLT-VWG--IKQ--LQ-RI-WEWEINNYTSLIHSLIEESQNQQ-EKNEQELLEGLLSGIVQQQNNLLRAIEAQQHLLQLV |
2 | 3rkoB | 0.07 | 0.06 | 0.87 | 1.14 | CNFpred | | MLMWATLMLLGGAVGKSALADAMAGPTPVSALIHAATMVTAGVYLIARTHGLFLMTPEVLHLVGIVGAVTLLLAGFAAL------------VQTDIKRVLAYSTMSQIGYMFLALGVQAWDA--------AIFHLMTHAFFKALLFLASGSV |
3 | 2cmrA | 0.06 | 0.05 | 0.92 | 1.17 | DEthreader | | VQQQNNLLRAIEAQQHLLQTVWGEIYTSLIHSLIEESQNQQEKNEQELL-GQLLSGIVQQQNNLLRAIEAQQHLLQVWGI--------KQLQWWDEINNYTSLIHSLIEESQNQQEKNEQEL-LE-G-QLLSGIVQQQNNLLRAIEAQQHLQ |
4 | 3rauA | 0.12 | 0.10 | 0.80 | 1.00 | DEthreader | | NLGALHSMLGAMD--K------RVSGMKVSCTHFQCAAGAFAYLREHFPQASVSRQILTLNVNLMLGQAQECLLEKSM-LDNR-------SFLVARISAQVVDYYKEACRALENTASLLG--------------RI-QKDWKKLVQMKIYYA |
5 | 4he8F | 0.12 | 0.11 | 0.89 | 1.10 | CNFpred | | LLALAGLLLFLGAVGKSALPDAMAGPTPVSALIHAATMVTAGVYLIARSSFLYSVLPDVSYAIAVVGLLTAAYGALSAFGQTDIKK-------IVAYSTISQLGYMFLAAGVGAYWVALFH---------VFTHAFFKALLFLASGSVIHAL |
6 | 3ux4A | 0.07 | 0.06 | 0.85 | 1.00 | DEthreader | | -MLGLVLLYVGIVLISNGIGLTKVSTAVMNFFVGGLSIVCNVVVITYSAPT--SFYGPATGLLFGFTYLYAAINHTF----------------GLDWRPYSWY-SLFVAINTVPAAILSHYSD--MLDDHGDW-WAIIWLAWGVLWLTAFEN |
7 | 5d3mD | 0.05 | 0.03 | 0.68 | 0.65 | DisCoVER | | YLPGVYRV-DP--RAKLLTTFY---------------------------FIGVFWDG-VKPMIWMIVFTSLLQT-FFMAGGKVYWHWWIFTLSSEGLINGLYVFIRFA-------------MIILVSTVMTVTT--KPLEIADAMEWMLTC- |
8 | 6ygaB3 | 0.06 | 0.05 | 0.83 | 1.00 | DEthreader | | SIEFSLKGFD-D------------KPF-EAYS-FWYVYYLSHHLETFLKKLNYLLKEINITKSLCLIEVFQFAIL-KSF--GLIDS------GFDKLERATNFIETEVRNVVSSIDEI-QGIKGDVTGT-LSEYYCKLKHTSKALSVNSKVN |
9 | 6a2jA | 0.05 | 0.05 | 1.00 | 0.51 | CEthreader | | ISIILVLSLAFWSWRKITPIFRETTFLAIMSIIFLFLQALLGALAVVFGSNALIMALHFGISLISFASVLILTLLIFEADKSVRTLVKPLQIGKKMQFHMIGILIYSYIVVYTGAYVRHTESSLAGLPTQFHEWVQMGHRAAALLLFVWIIV |
10 | 5cwqA | 0.04 | 0.03 | 0.87 | 0.70 | EigenThreader | | ELAEALIEEARAVQELARVACERGNEAERASEKAQRVLEEARKVSEEAQGDDEVLALALIAIALAVLALAEVACCRG----------------NSEEAERASEKAQRVLEEARKVSEEAREQG----DDEVLALALIAIALAVLALAEVACC |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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