>PF17173 (340 residues) VEDGAGVLDRNRLIPAVEAMDFYEPTRVAVFTYRGSAEDNLNEEVLRFARAQHPEWISGD GQKWADGLFIFAVDPVGRHVGTYMGEDRKVSLEQREDIQNASKDLLRDAQWTDGTIAGIR RGAELINQPWYRSTAFLVTAWSSAAAAVLGAAAWLVVRWRTRAASRRELARGDASYSSVS MDLQVTELNAGTIPESSRYGSTVLEKHRTFLAKYKTATELANRAHALTPRAMSRRPNLKL VRDFADASAELDALDDVIADTNALLNRGSAWASAWDRQLAPFRSDLAALEQMLSKRHAAG DSATAAALRSFRDESHRDIERWSAELAEGTTSPETALDRL |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | VEDGAGVLDRNRLIPAVEAMDFYEPTRVAVFTYRGSAEDNLNEEVLRFARAQHPEWISGDGQKWADGLFIFAVDPVGRHVGTYMGEDRKVSLEQREDIQNASKDLLRDAQWTDGTIAGIRRGAELINQPWYRSTAFLVTAWSSAAAAVLGAAAWLVVRWRTRAASRRELARGDASYSSVSMDLQVTELNAGTIPESSRYGSTVLEKHRTFLAKYKTATELANRAHALTPRAMSRRPNLKLVRDFADASAELDALDDVIADTNALLNRGSAWASAWDRQLAPFRSDLAALEQMLSKRHAAGDSATAAALRSFRDESHRDIERWSAELAEGTTSPETALDRL | |||||||||||||||||||
1 | 2lt2A | 0.10 | 0.04 | 0.38 | 1.19 | HHpred | MSKIEEFLEEKAIVDAIRDAEKNTSGEIRVHLEKTSEI-----DVFDRAMDVFHNLKM--DNTKLQNGVLIYVAVEDKTFVIYGDKGINDVVDFWDTTRNAIQLQFKQGNFKQGLVDGIEKAGMALAKYFPWKKDD------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ | |||||||||||||
2 | 5xg2A | 0.15 | 0.11 | 0.69 | 1.19 | FFAS-3D | ------------------------------------------------------------------------------------------AIVRWGKRKEKLIEEIRA--REEERNALVVRLGEI-----DRTFAVAREEFDTVVKELEEARKSLYEGEARIKRAEEEKERLKAEILTGEARLPGLRERAENL---RRLVEEKRAEISELERRLSSITSQSFELR--IKLSDLEKELELARKDLEKVLAEERAVREEIEVAKRRINELDTLIERERGELAKLRGRIERLERKRDKLKKALENPEARELTEKIRAVEKEIAALREELSR----VEGKLEGL | |||||||||||||
3 | 5anpA | 0.11 | 0.04 | 0.36 | 0.75 | DisCoVER | VYDYAELLSAAEKASLENKLIYSTSTQIVVVIIPS-TNENINYLGAQWGE-KW-GIGQA----KEDNGVLIILALNDKRIAINTGYGVLLTDAMSKRIIEDITPFFKRKDYPGGLDRGADAIFEVLTGEY------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ | |||||||||||||
4 | 3zukA | 0.09 | 0.06 | 0.71 | 0.67 | DEthreader | ATISAADAT--------------------ELAAA------LG--TLQRA--------------G---VGGGIGGFDWVWVTAL------------RQ-PDYLVTFASLWAVVDWKCWAWRLIRADFFYGRT-LTGAQQLR-DRWKRGV-LV---M--DAVGKLYVQRH-FA-KSRIDTLVDNLQEAYRISISELDWM------A---L--FTAKV-GYP-IKWR-DYSLIGYVNFMTPQTVNAFAAILQFFDNYGALLAYQLSLNGNP--APVIGLTGMQRVFFGWAQIWRTKS--ARR-AVDPHSPPEFRCNGVVRNV-DAFYQAFD------------ | |||||||||||||
5 | 2kw7A | 0.15 | 0.06 | 0.39 | 0.62 | CEthreader | VTDEAGLLQEEVMNGRLRAIRSSHAVEFAVVTLPSIGDAPLEDFTLKLARQWG---VGNEK---NNNGLLLVLVLDQRRVRFETGYGLYLPDGLLSRIIHDMIPHFRSGNYAEGLSEGVLAVQQVLDGSLEHHHHHH----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
6 | 3kbuB | 0.08 | 0.06 | 0.79 | 0.88 | EigenThreader | ------QQYYLDADEAEAWIGEQELYV-------ISDEIPK------------DEEGAIVMLKRHLRQ---------------QRAVEDYGRNIKQLASRAQGLLSAGHPEQIIRLQGQVDKHYAGLKDVACERKRKLENMYHLFQLKRETDDLEQWISEKELVASFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLA---------ASYDLHRYFYTGAEILGLIDEKHREL-----PEDVGLDVFERDVHLLGVQVQQFQDVATRLQTAYAAEAIQNKEQEVSAAWQALLDACA---------------- | |||||||||||||
7 | 2kw7A | 0.19 | 0.07 | 0.38 | 1.24 | HHpred | VTDEAGLLQEEVMNGRLRAIRSSHAVEFAVVTLPSIGDAPLE----DFTLKLARQWGVGN-EKNNNGLLL-VLVLDQRRVRFETGYGLEGYLGLLSRIIHRMIPHFRSGNYAEGLSEGVLAVQQVLDGSLEHHHH------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
8 | 6m3pA | 0.12 | 0.09 | 0.76 | 0.48 | MRFsearch | -------------------------------------------EAEAWMSEQELYMMS-------------------------------EDEQSAVSMLKKHQILEQAVEDYAETVHQLSKTSRALVAD-SHPESERISMRQSKVDKLYAGLKDLAEERRGKLDERHRLFQLNREVDDLEQWIAEREVVAGELGQDYEHVTMLQERFREFARDVDTVNNMADELINS--GHSDAATIAEWKDGLNEAWADLLELHKFYHDAKEIFGRLQRMHTTFEHDIQALGTQVRQLQEDAARLQAAYAGDKADDIQKRENEVLEAWKSLLDACEG----RRVRLVDT | |||||||||||||
9 | 2tmaA | 0.09 | 0.07 | 0.83 | 1.15 | FFAS-3D | -------MDA--IKKKMQMLKLD------------------KENALDRAEQAEADKKAAE-------------------------DRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIE--SDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTEKSIDDLEDELYAQKLKYKAISEELDHALND----MTSI | |||||||||||||
10 | 6r9tA | 0.07 | 0.06 | 0.91 | 0.77 | SPARKS-K | QLAAAARAVTDSINQLITMCTQQAP----------------GQKECDNALRELETVRELLENPVQP--------INDMSY-FGCLDSVMENSKVLGEAMTGISQNAKNGNFTEAAAQAAYLVGVSDPNSQAGQQGLVEPTQFARANQAIQMACQSLGEPGCT--QAQVLSAATIVAKHTSALCNSCRLASART-TNPTAKRQFVQSAKEVANSTANLVKTIKALDGAFTE-ENRAQCRAATAPLLEAVDNLSAFASNPEFSPEGRAAMEPIVISAKTMLESAGGLIQTARALAVNP---RDPPSWSVLAGHSRTVSDSIKKLITSMRDKAPECETAIAAL | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |