>PF17088 (388 residues) LSSVLSLLINIDQETILDFLGINGPFNSEDYSYLFGTSQVSTPVSLETFKLIIQSIWEHY QHGLGFVDIENIALFILVIRFIFLSKKYNIKTGFFITCIGLGAGYLWYMHLRDLAYYYMR TLWMCPLTHNLAYDFSEIFYQQRSEFSKAGTRFDSNSFYGPAVRAFTDITSNDNYRYDPI SMLWSYLPTDIKFLSDKVYYFITLKAIPQTYRFIDTQITNLSGMLWYTFIVRINKRYCPY LLRWHWTFLIGLEFLERPFIFVQDRLIYYLNNILIPNSYFREAELVTNLLITLVAAQYIF IILGMLHALCGQYFYFPFLTENTELHIGLRPKDSIYSGGHTIWQNKRAYMISRQASSKLK KYRFGTIRSAYSKLPRLWYGWLGRGTLD |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | LSSVLSLLINIDQETILDFLGINGPFNSEDYSYLFGTSQVSTPVSLETFKLIIQSIWEHYQHGLGFVDIENIALFILVIRFIFLSKKYNIKTGFFITCIGLGAGYLWYMHLRDLAYYYMRTLWMCPLTHNLAYDFSEIFYQQRSEFSKAGTRFDSNSFYGPAVRAFTDITSNDNYRYDPISMLWSYLPTDIKFLSDKVYYFITLKAIPQTYRFIDTQITNLSGMLWYTFIVRINKRYCPYLLRWHWTFLIGLEFLERPFIFVQDRLIYYLNNILIPNSYFREAELVTNLLITLVAAQYIFIILGMLHALCGQYFYFPFLTENTELHIGLRPKDSIYSGGHTIWQNKRAYMISRQASSKLKKYRFGTIRSAYSKLPRLWYGWLGRGTLD | |||||||||||||||||||
1 | 1kq3A | 0.07 | 0.05 | 0.69 | 0.65 | DisCoVER | AINILEEELSFGERAFV-VI-D-----DFVDKNVENFFSFKVRVNK--QI--F--G-----GECSDEEIERLSTDV-VVG-IGGGKT-------LDTAKAV--AY--K--L----------------------------------------------KP-VV--IVPTIA------TDAPCSALSVIYTPYL--FLPRNPDVV--LV---------DTEIVAKAPARFLVAGMGDALAEAESCTRLGSMTAYALAR-LCYETLLEYGVLAKRSV-----E-EK--SVTPALEKIV--E--ANTLLSGLGFESGGLAA----AHAIHNGLTTYLHGKVAIGVLASLFLTIEEVYSFCEEVGLPTTLAIGLDGVKVAACTIHNEVALAD- | |||||||||||||
2 | 6uebA | 0.05 | 0.03 | 0.68 | 0.67 | DEthreader | VLN--V--------MTDNLNKVFILVPESKRWARVSC-VSNDQIVNLANIMSSVQAVFIESFLLASRIIYLDPSLGGIS---------------IRQFSDPVSEG-LSFWREIWLSSQEIHALCQEAGNP---DL--GE-RT--LESFT---E-LNIRGGASPTILLKDIRKKTDFILPRFLSELSSGIPESIIG-----LREISWGRKVV-TV--EM-GGGNPRVSVSV---LKGYLGSSSEGGY--------------------L--YAQTWTSELVQ-----HW-HLRCNRCVRPIDDVTL---------------------------------GYNDGTIFP--I--YLRGLARGDWLWIRWVQEVRHAAR--ASG-------- | |||||||||||||
3 | 2x1gF | 0.08 | 0.08 | 1.00 | 0.56 | CEthreader | ITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDPGIYPVEESCSTMALAFWYMLQDEVFAHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHRQIPRLMRVLAEIPYETALETMGSYCNWLMYIPPAINLLVRGLNSSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQATPAARIRTIFRLNMISTLFSSLNTPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSQ | |||||||||||||
4 | 1jb0B | 0.06 | 0.05 | 0.94 | 0.72 | EigenThreader | KFRPSLSWFKNAESRLNHHLAGLFGVSSLAWAGHLIHVAILTFLGGIAVLFIVAGKEMMDAPHQGIYETYNNSHFQLGWHLACLGVITIAGFLMVGAFAHGAIFLVRDLDRVLQHKEAIISHLSWVSLFLGFHTLGLYVHNDVVVAFGTPEKQILIEPVFAQFIQAAHGKLFDTLLSNPDSIASTAWPNYG---NVWLPGWLDAINSGDFLVHHAIALGLHTTTLILVKGALDARGSCDISAWDAFYLAMFWMLNTIGWVTFYWHWKHLGVWEGNVAQFNESSMGWLRDY----------------LWLNSSQLINGYNPFGTN-----NLSVWAWMFLFGHLVWATGFMFLISLSIVQARLVGLAHFSVGYILTYAAFLIASTAAKF | |||||||||||||
5 | 3jacA | 0.14 | 0.10 | 0.72 | 0.35 | HHpred | ------------------------------HDILHTKYRAATDVLADIVDIIIFGFWAFGKH-SAATDIPQAFGTMVIDRALYLRKTVLGKLAFQVVLVVAI--HIWMFFILPAVT--ERMFSQNAYFVKFALSAYQIRCGYPTRIL---GNF------------LTKK-------YNHLNL---------------FLFQGFR-LVPFLV--------ELRAVMDWV---------------WTDTTLSLSNWVEDIYANIFIICRETEKK--YPQPKQKKKKIVKYGMGGIILFLIAIIWFPLLFMSLRSVVGVVNQPITVTLKLGGYEP--LFTMTPQAYEELSQQFDYPLAMQFISQYSPEDIVQIEGSSGALWR--------- | |||||||||||||
6 | 6q82A | 0.13 | 0.11 | 0.79 | 0.50 | MRFsearch | --KTVSTLCETCREELTPYLHF-----ISFLNTVIPDS----NVSHFTRTKLVRSIGYVVQCQVSNGPEEQAKYILQLTNLLSGSIEHCLYINCLLYCISELATSLIPLQIRSKICTIDKVLDNSIYCKNSAFVEIGCLIVGKGLNL------PDGEPYFLKYNSEVNFVLRLPYFVYLLEKLISEFTPQEFDFFEKILLVYYDAYLLQTIGFVNNVLDVKWTSFILPQFLKLIPSREKFTIVAVAKFWTKLTTVRQQVSSIGGDLVYQIYGLFH--TQRSDLNSYTDLLRALVAKF-PIEAREWLVAVLP------------------------------QIAGHEKFINKLLI--------------------------------- | |||||||||||||
7 | 5lj3H | 0.09 | 0.08 | 0.85 | 0.81 | FFAS-3D | IRSHVSPIISLTQESHRDLFQVNILIGRDIICKNVVDFTLNNGRLIPALSALIALLNSDIPD-IGETLAKELMLMFNILQCLSILFLYDVIHEIVILQI--------LLLLLEKLRLVIAVMKICWKLALVSKKTHDMIWEKLRYILQTQELSSTLRESLETLFEIRQKDYKSCENFNELTMAFDTLRQKLVEFKKKIYLVLKSSLGDEAAHKLLKLKKSVVDIIIKSSLQE--STFSKF---YSILSERMITFHRSWQTAYNETFEQNYTQDI-EDYETDQLRILGKFWGHLISIFIKFLFQELVNELLQLRLNSSKLDEHIRYSIN--FFTAIGLGLLT--EDMRSR--------------------------------------- | |||||||||||||
8 | 6h02A | 0.09 | 0.09 | 0.96 | 0.72 | SPARKS-K | KIALLCNAYSTNGALVETIYGIPLPGTNCMASGSITPLPMNDSLTVHAKMSLIHSIATRVIKLLAPALVETYSRLLVYMEILPTVFKSHAWGILHTLLEMFSYRMIQPHYRVQLLSHLHTLAATNQNQLHLCVESTALRLITQPQFTRFLSDPKLSAESEELNRALILTSIQGTWCKDILQTIMSFTPHNWASHTLSCFPGPLQAFFKNLKKNVEEEYRKWNDIITHFWKMLLETDHIN------QIGYRVLERIARALVAHVRTFADFLVYEFSTSALNKCIEILNDMVWKYNIVTLDRLILCLAEAQVCYFIIQLLLLKPNDFRVKENSPEH--------WLQNDWHTKHMNYHKKYPEKQVDPPVQIQSPYLPIYFGNVCLRFLP | |||||||||||||
9 | 3rkoB | 0.09 | 0.06 | 0.69 | 1.15 | CNFpred | --FNIGFNLVLDGLSLTMLSV-----------------------VTGVGFLIHMYASWYMRGEEGYSRFFAYTNLFIASMVVLVLA-DNLLLMYLGWEGVGLCSYLAMKAFVVTRVGDVFLAFALFILYNELLNFREMVELAPAHFADGNNMLMW--ATLMLLGGAVGKS-----AQLPLQTWLADAM----AGPTPVSALIHAATMVTAGVYLIARTHGLFLMTVLHLVGIVG----AVTLLLAGFAALVQTDIKRVLAYSTMSQIGYMFLALGVQ--AWDAAIFHLMTHAFFKALLFLASGSVILAC------------------------------------------------------------------------------- | |||||||||||||
10 | 3p8cA | 0.04 | 0.03 | 0.70 | 0.67 | DEthreader | ------------S--IPQVKC--QPNR-V-----------EIYEKT-VEVLEPEVTK--LELKNMKCSVKNDHSAYKRAAQFL-RKMA----D-PQSIQESQNLSMFLANHNKITQLQKVMGFGLIDYFKLQVVQESVWKLVHPTDKYSNKDCPERATRYNYTSEKFALVEVIAMIKG--LSQLWFREFFLEQFSYIAEVNLCFDQFVYKLADQIFAYYKVMAGSLLLD--L------TSIVELDGLLEI---------------------------------------------------MFREANHNVGRITHVRDKQSYGSYRNFVGPPHFQIIVEVGNAIL--------HRLWSAMQFVYCIVFTVEQCFGDG----------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |