>PF17076 (839 residues) HSLKEGEASDRSSEMLPKQRSIIGSHVQRPPSQTTLGRSRAGSNTMNKVSGLDIARRPSE NLLSNMNCSDNGNGGNMLNSFVNSALPPPKVNPAQTRRERPASNSSIGTKTTEVFSSTSA SSSLGDTSDEGEGSDADKSKINTFPSILMEKATQGRGADGNGMRSASNNTIVEATTDGSK MALQKSMSFDDTAAEKTMNKSRHSYQEQFSSKKSQSSLLNSKQRSRAKSQTCSSTGYNNS SILKTFGISSKISNSSDRIEASSLEFNVPSQKPLNCKPLTPSQKYRLRKEQSEMNLRNTI KRKEKFYDSQEQILELQEGDVDDSLIWNVPMASLSTNSFLASAKPDDMNNLAGKNDLSEY TGGLVNDNSEISYTKQNHRYSNISFASTTSNASLLDFNEMPTSPIPGLNKVTDFQFIQDT TKSLASVYLHSSNRLSRSKLSERTKSSDFLPIELKEAQNQGMEDLILVSENKLDVVSHSR PSWLPPKDRQEKKLHERQINKSMSVASLDQLGKNKDREEKLIRDETNRQKYVLLLDRDIT RNSSLQSLSKMVWDTPFSDETRSTIYSEILQSKTRFITKNYIQPFHELQELLTKMGDFPK NKEIEISQLIETSLRRKVSGLHDICPDLMLLLKIKSISSQGIVTGDELLFHHFLVSESFQ NLGLNEIWNIVNLVQMTCFNDLCKEKFDAKVLERKGVVAGYLSQNEEFKDEFNTECINST TWWNILERIDHKLFMWIMDIIVVNNSQSYKNSPINEDEFVNKDWEYYRSKKVVINYKILI SFALNVLLNYHFGFTDLRSLCNVNDQRFCIPVFINDEFVDADTVNAVFIKKWAHYYKKF |
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D-I-TASSER simulation is guided by the consensus contact map (left figure, top 2L) and distance map (right figure) derived based on confidence scores of AttentionPotential. In the contact and distance maps, the axes mark the residue index along the sequence. For the contact map, each dot represents a residue pair with predicted contact, while for the distance map a color scale represents a distance of 1-20+ angstroms. |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 560 580 600 620 640 660 680 700 720 740 760 780 800 820 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | HSLKEGEASDRSSEMLPKQRSIIGSHVQRPPSQTTLGRSRAGSNTMNKVSGLDIARRPSENLLSNMNCSDNGNGGNMLNSFVNSALPPPKVNPAQTRRERPASNSSIGTKTTEVFSSTSASSSLGDTSDEGEGSDADKSKINTFPSILMEKATQGRGADGNGMRSASNNTIVEATTDGSKMALQKSMSFDDTAAEKTMNKSRHSYQEQFSSKKSQSSLLNSKQRSRAKSQTCSSTGYNNSSILKTFGISSKISNSSDRIEASSLEFNVPSQKPLNCKPLTPSQKYRLRKEQSEMNLRNTIKRKEKFYDSQEQILELQEGDVDDSLIWNVPMASLSTNSFLASAKPDDMNNLAGKNDLSEYTGGLVNDNSEISYTKQNHRYSNISFASTTSNASLLDFNEMPTSPIPGLNKVTDFQFIQDTTKSLASVYLHSSNRLSRSKLSERTKSSDFLPIELKEAQNQGMEDLILVSENKLDVVSHSRPSWLPPKDRQEKKLHERQINKSMSVASLDQLGKNKDREEKLIRDETNRQKYVLLLDRDITRNSSLQSLSKMVWDTPFSDETRSTIYSEILQSKTRFITKNYIQPFHELQELLTKMGDFPKNKEIEISQLIETSLRRKVSGLHDICPDLMLLLKIKSISSQGIVTGDELLFHHFLVSESFQNLGLNEIWNIVNLVQMTCFNDLCKEKFDAKVLERKGVVAGYLSQNEEFKDEFNTECINSTTWWNILERIDHKLFMWIMDIIVVNNSQSYKNSPINEDEFVNKDWEYYRSKKVVINYKILISFALNVLLNYHFGFTDLRSLCNVNDQRFCIPVFINDEFVDADTVNAVFIKKWAHYYKKF | |||||||||||||||||||
1 | 3s4wA | 0.05 | 0.05 | 0.93 | 1.12 | EigenThreader | LKDDDLASLLQNQAVKGRAVGTLLRAVLKGSPCSEGDLQQDVASEIIGLLMLEVHHFPGPLLVDLASDFVGAVREDRLVNGKSLELLPIILTALATKKEVLACGKGDLNGEEYKRQLIDTLCSVRWPQRYMIQLTSVFKDVCLTPEEMNLVVAKVLTMFSKLNYQLLVLSS----KGSRRSVLDGIIAFFRELDKQHREEQSST-------APADELYHVEGTVILHIVFAIKLDCELGRELLKHLKAGQQGDPSKCLCPFSIALLLSLT--------RIQRFEEQVFDLLKTSVVKSFKDLQLLQ-GSKFLQTLVPQRTCVSTMILE------VVRNSVHSWDHVTQGLIEFGFILMDSYGPKKILDGSNQHACKLGANILLETFKIHEMIRQEILEQVLNRVVTRTSSPINHFLDLFSDIIMYAKVTETFDYQTVQGLLKAVQPLLKISMSMRDSLILVLRKAM----------------FASQLDARKSAVAGFLLLLKNFKVLGQCTQSRYSAVANETFCLEIIDSLKRSLGQQADIRLMLYDGFYDVQLASSIMQTLFSQLKQFYEPEPDLLPYSELDDMLESITVRMIKSELEDCLIMGVCEVLMEYNFSISNFSKSKFEEILSLFTCYKKFDSLLSLKFVSDLLTALFRDSIQSHEESLSVLRSMHYAVNVTLQKIQQLIRTGHVSGPIFQNLCDITRVLLWRYTSLCLEGLQKTFSVVLQFYQPKVQQFLQAL----DVMGTEEEEAG-----VTVTQRASFQI----RQFQRSLLNLLSSEEDDFNSKEALLLIAVLS--TLSRLLEPTSPQFVQMLSWTSKICKEYSQE | |||||||||||||
2 | 5a9qA | 0.11 | 0.10 | 0.95 | 1.13 | FFAS-3D | --FDGLSETILAVGLVKPKAGIFQPHVRTPVDIVILGLSYANLSGGMQLLPDPLS-LPTDNTYLLTITSTDNAYQKINHSKSSLSFLVPSLLQFTFSEDDPILQIAIDNSRNILYTRSEKGVIQVYDLGQDGQGMSASVSQNAIVSAAGNIARTIDRSVFKENSESLDCQLLAVTHAGVRLYFSTCPFRARPNTSASSTVEKPSKVHRALYSKGILLMAASENDNDILWCVNHDTFPFQKPMMETQMTAGVDGHSWALSAIDTPLNKDHIPITDSPVVVQPPKKFVFHKLRPVDQLRHLLVEIERFFKLHQEDQ--------------------ACATCLILACSTCDREVSAWATRAFFRYGGEAQMRFTTLPVYSGKHNGICIYFSRIMGNIWDASLVVESSVP----CQLLESVLQELKGLQEFLDRNSQFAGGEAQLSEKISLQAI-QQLVRKSYQALALWKLLCEHQFTIIQKELQEQLKITTFKDLVIRDKELTGALIASLINHLQDISKANELLQRSRQVRESLKEYQK--ISNQVDLSNVCAQYRQVRFYEGVVELSLTAAEKKDPQGLGLHFYKHYKCITDTLQELVEAGHHFEQMLKALYNWLIQV------DLADKLLQVASLEPHLVRMAKRYMDLLWRYYEKNRSFSN-AARVLSRLLEYIARAIFLHELEEKME--VARIQLQIQETLQSVQDAVSQLDSELMDITKLYGEFAD-PFKLAECKLAIIHCAGYSDPILVQTLWQDIIEKELSDSVTLSSSDRMHALSLKIVLLGKIYAGTPRPLDFIVQF------LEQQVCTLNWDVGFVIQTMNERLLEVYDQL | |||||||||||||
3 | 7abhu | 0.07 | 0.06 | 0.91 | 1.13 | SPARKS-K | ----------EYKKHRRTMIISAETPRTDRGGDSIGETPTPGASKRK------------------------ERNRPLSDEELDAMFPEGYKVLPPPAGYVPIRTPARKLT-------ATPTPLGGMKSVNDQPSGNLPFLKPDDIQYFDKLLV--DVDESEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLI-DEDYYARVEGREIISNLAKAAGTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLPFLKAVCKSKKSW------QARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKEQYRKMVMETIEKIMGNLGIDHKLEEQLIDGILEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSA---KVRQQAADLISRTAVVMKTCQE----EKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVTPPIKDLLPRLEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRVNTFGYIAKAIPHDVLATLLN------NLKVQERQNSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDAL---------MDRDLVHRQTASAVVQHMSLGV | |||||||||||||
4 | 6g90O | 0.09 | 0.04 | 0.41 | 1.01 | CNFpred | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PKFLREE--IAPEFFQKFWVRRVA---------DRPLNKVVTYTTVTL--AKKLGCSYTIDKLL----TPLRDEAEPFRTMAVHAVTRTVNLLGTADL--------DERLETRLIDALLIAFQEQNSDSIIFKGFGAVTVSLDMKLAPIVSTILNHLKHKTPLVRQHAADLCAILIPVIKNCH-----EFEMLNKLNIILYESL--GEVYPEVLGSIINAMYCITSVMLQPPINQILPTLTPILRNHRKVEVNTIKFVGLIGKLAPTYAPPKEWMRICF----ELLELLKSNKEIRRS------ANATFGFIAEAIPHDVLVALLNNLKVQ----------------------------ERQLRVCTAVAIGIVAKVCGPYNVLPVIMNEY--------------TPETNVQNGVLKAMSFMFEYI | |||||||||||||
5 | 2g77A | 0.00 | 0.00 | 0.01 | 0.83 | DisCoVER | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VKIKDPST------------------------------------------- | |||||||||||||
6 | 1vt4I | 0.04 | 0.04 | 1.00 | 0.80 | CEthreader | KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQRGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG | |||||||||||||
7 | 4c0oA | 0.07 | 0.07 | 0.93 | 1.07 | EigenThreader | DQLLQIRQDVESCYFAAQTMKMKIQTSFYELPTDSHASLRDSLLTHIQNLKDLSVTQLALAIADLALQMPSWKGCVQTLVEKYSNDVTSLPFLLEILTVLPEEVHSRSLRIGANRRTEIIEDLAFYSSTVVSLLMTCVEKAGTDEKMLMKVFRCLGSWFNLGVLDSNFMAN--NKLLALLFEVLQQDKTSSNLHEAASDCVCSALYAIENVETNLPLAMQLFQGVLTLETAYHMAVAREDLDKVLNYCRIFTELCETF---LEKIVCTPGQGLGDLRTLELLLICAGVVEISFNFWYRLGEHLYKTNDEVIHGARHCQLEPDHEGV------PEFRMRVSDLVKDLIFLIGSMECFAQLYSTLKEGNPPWEVTEAVLFIMAAIAKSVDPENNPTLVEVLEGVVRLPETVH---TAVRYTSIELVGEMVVDRNPQFLDPVLGYLMKGLCEKPLASAAAKAIHNICSVC--------------RDHMAQHFNGLLEIARSEAAVGLLKGTALVLADKITECLSELCSVQVMALKKLL-----SQS-----------SDPTVFLDRLAVIFRHTNPIVHPCQKVIQEIWPVLSETLNKHRADNRIVERCCRCLRFAVRCVGKGSAALLQPLVTQMVNVYHVHQH--SCFLYLGSILVDEYGMEEGCRQGLLDMLQALCIPTFQLLEQDTVDDLFRLATRFIQRSLRSQVLQWAIASTTLDHRDANCSVMRFLRDLIHTGV-----------ANDHEEDFELRKELIGQVMNQLGQQLVSQLLHTCCFYTLPDVAEVLWEIMQVDRPTFCRWLENSLKGLPTVTHKQLTDFHKQVTSDFTRLF | |||||||||||||
8 | 4p17A | 0.15 | 0.05 | 0.32 | 0.63 | HHpred | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EDERRSCDVNAEREVPLWQHYIEKDKL-PSNETKLKEMIR-KGVPPTLRNWVWMETSGANKKK-AGHAANYYSIMV---KAG-E-----ESQYKKDIETDSTHTFPSSPDGRAALCRVLQAYSVHNEGYVRAMNTIVGLMLVA--LNRNEEAAFWLLAALVEDILYPGTY---------SRMRALDELIGT------KL-------PRLQQHFQAIDFDISMLATDWYLC----LFSV--SLPSETVMRTWDSLFYE----GPKILFRVALAMLKIYELRVGDAGELLMMR--N--AA----ATMHQ----RDVLMATAFDHIG-- | |||||||||||||
9 | 4p17A | 0.16 | 0.05 | 0.31 | 0.43 | MRFsearch | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QEDERRSC-------------------------DVNAEREVPLWQHYIEKD-KLPSNETKLKEMIRKG-VPPTLRNWVWMETSG----ANKKKAGHAANYYSIMVKA------GEESQYKKDIETDSTHTFPDSPDGRAALCRVLQAYSVHNVGYVRAMNTIVGLMLVALN--RNEEAAFWLLAALVEDILYPGTYSRM---------RALDELIGTKPRLQQHFQAISMLATDWYLCLFSVPSETVMRTWDSLFY------------------------------EGPKILFRVALAMLKIY------EDNMLRVGDAGELLM-------HQRDVLMATAFDHIGS----- | |||||||||||||
10 | 6vacA | 0.12 | 0.08 | 0.65 | 1.00 | FFAS-3D | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RTSMLSPKSYYELYMAISDHYLEVYLTDEFAKGRKVADLYELVQGNI-------IPITVGVVYVKSFPQSRKDILKDLVEMCRGVQHPLLQCTRNILPDEGEPTDEETTGDISDSMDFVLLNFAEMNKLWMQHQGHSRDREKRERERQELRILVGTNLVRLSQTGILEQALAQEYLMECIIQVLNPFLRACAELHQDRLALFAHREDGPGIPAEIKLFDIFSQQVATVIQQVSLINLAMKCYPDRVDYVDKVLETTVEIFNKLNLEHIATSKELTRLLKIEYFDYESRKSMSCYVLSNYNTEIVSQ--DQVDSIMNLVSTLIQF-ADEQSLVGRFIH------LLRSDDPDQQYLILNTARKHFGAGLVFAAYQLAFRYKENSQMDDKWEKKCQKIFSFAPLRLFLQGALAAGEIGFENHETVAYEFMSQASLYEDEISDSKAQLAAITLIIGTFSEENHEPLRTQCALAASKLLKKPDQRVMECLKKALKIANQCDPSLQVQLFIEILNRYIYFYEKTIQVLNQLIQKIRED----LPNLESSEETEQINKHFHNTLEHLRSR- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |