Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280
| | | | | | | | | | | | | | |
| Seq | GWRVQSLPTSAPLSVSLPTNIMPPTTIWTSSPQNTDADTASPSNGTHNNSVLPVTASAPTSLLPKNISVESREEEITSPGSNWEGTNTDPSPPGFSSTSGGVHLTTTLEEHSSGTPEAGVAATLSQSTAEPPTLISPQAPASSPSSLSTSPPEVFSASVTTNHSSTVTSTQPTGAPTAPESPTEESSSDHTPTSHATAEPVPQEKTPPTTVSGKVMCELIDMETTTTFPRVIMQEVEHALSSGSIAAITVTVIAVVLLVFGVAAYLKIRHSSYGRLLDDHDYGSWGNYNNPLYDDS |
1 | 2fvnA | 0.09 | 0.04 | 0.48 | 0.64 | DisCoVER | | -------------SA-EL--HLESRGGSG-------TQLRDG--------AKVATGRIIC--RE--AHT------GFH-V--W----------MNERQVDGRAERYVV-QSKDGRHELRVRTGGDGWS---PVKGEGGKGVSR-------PGQEEQVFFDVMADGNQ--------------------------------------DIAPGEY-RFSVGGA-----------C---V--VPQEDNKQGF-TPS--GT--TG-TTK-LT--V-------------------------- |
2 | 4gnsB | 0.08 | 0.05 | 0.65 | 0.67 | DEthreader | | --YQFLNIVTAIITN---T----------------------------------NPELKLECPFYVSCKKELCRFLPRSL-C----------------------------GWDKSTVNMYLFIITPLVDFTIYLL---YTAITDILTL-------------EY-RI--------KPLNGHY-SLWKEDE--RQWDDAIGPICGSVNLLLTSIRFDCQQLLYPTLLDDTIISLLIKKISYDC-R-Y-YN-YCQ-IFNLQLLEKLCNELGT-HI-LRNKILLQIGDEIMVMIDAMLAA- |
3 | 1vt4I3 | 0.06 | 0.05 | 0.97 | 0.62 | CEthreader | | GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG--------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG |
4 | 5i9dA | 0.04 | 0.04 | 0.86 | 0.72 | EigenThreader | | IDGLCKAGKGIKPDVVTYNTLIDGLCKAG---------------------KLDEALKLFIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYSTLIDGLCKAGKLDEALKLFEEMVEK------GIKPNVVTYSTLIDGLCKAGKLDEALKLFEMKGIKPNEEMKGI-------------KPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKTYNTLIDGLCKAALKLFEEMVEKGIKPDVVTYNTLIDG |
5 | 1x6lA | 0.21 | 0.07 | 0.32 | 0.37 | HHpred | | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DPFFFMGD-KVKRDRFVGSVQTWKFDGVDIDWEFPGGSPVLLMKELRAMLDQGRKYELTSAISA---------GKDKIDKVAYNVAQNSMDYGAFDLHQTALNAPA |
6 | 2kncB | 0.17 | 0.03 | 0.20 | 0.47 | MRFsearch | | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ILVVLLSV----------MGAILLIGLAALLIWKLLITIHDRKEFAKFEEERARAKWDTANNPLYKEA |
7 | 4nl6A | 0.13 | 0.11 | 0.88 | 0.49 | FFAS-3D | | GGSGGGVPEQEDSVLFRRGTGSDDSDIWDDTAKAYDKAVASFKHALKNGDICETSGKPKTTPKRKPAKKNKSQKKNAASLQQWDGCIYPATIASIDFKREEQNLSDLLSPICEVANNIEQNAQENENESQVSTDESENSRSPGNKSDNIKPKSAPWNSFLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGPPIIPPPPP-------ICPDSLDD-------ADALGS-------------MLISWYMSGY----HTGYMGFRQNQKEGRCSHSLN------ |
8 | 4btgA3 | 0.12 | 0.12 | 0.96 | 1.24 | SPARKS-K | | ----GFNLKVKDLNGSAR-GLTQAFAIGELKNQLSVGALQLPLQFTRTFSASMTSELLWEAYVYRVGRTATDANAVVSTPKELDPSARLRNTNGIDQQRGRAEVIFSDEELSSTIIPWFIEAMSEVSPLRPINETTSYIGQTSAIDHMGQPSHVV-VYEDWQFAKEITAFTPVK---LANNSNQRFLDVEPGISDRSATLAPIGNT-RGTVNSNGAEMTLGFPSVVRDPMVAIAALRTGIVDESLRA--SNDLKRSMFNYYAAVMHYAVAHNPEVVVSEHQGVAAEQGSLYLVWNV |
9 | 6xiwA | 0.12 | 0.03 | 0.22 | 0.40 | CNFpred | | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KMLLLTVVVSMYKSFFIIVGMFLLLLCYAFAGVVLFGTVK---YGENINRANFSSAGKAITVLFRIV |
10 | 4bujB | 0.06 | 0.04 | 0.64 | 0.67 | DEthreader | | -----------------------SSLPASNNV----------------SSNRNLATVLEYFFHLKLLYNWRVMVKYWTDYLLPLTKREFSLDLTQMGKGI--I---WKD---------T--TQVHESPNNLGLDQAVYIMHATDICTAKYITEYASAHLEKQ-----EESDSIEW----------------------------------------V-DKIQ--PSTIEKVCQAQLVKDTIEILQVLRLFIWIEVFKKSPDSQLLLENFAIIKGSQISESSE----KISNHICLGLS |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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