>PF17007 (457 residues) NLKEKIFQFGIYGAKLGMLDGSEVEMVIGEPWVEIITADAVEGLKRNFTTDCLRTETNRF MVENFSWSDLYVRMGSLAWKDYLTSGTFNFTSKEYFLIMSLLIEARRYVDNVELRKLNLD PKKTHYCINRLARKGFIEYKTSEEAQKKNFIYKVRAIVDERGFVMRRVAEKQLLDTNRAD LPGKKRMFEYRIDIGLYDNIREMILNSKDGIITEDLKNKLGVSSKIGYKLLNKIFNEEKD AVTRTEEFKGRIRRYRYHVGTKSSEEAFQEGGDGTRTVGYITSEERVRAIRKLMSTSPIL QLDKRTYEKLQELTGWRYEFDRRTIIKSAVLAGFKIYKQKRGKEGKCSRYMIMRNEMVES DIRALDVSNCDFQESMSEFQRKIYNIFVNSPKFVEMDNGYIPLREERLKLLYRFLVNHMT SRGDESLRFDWEVVREMEFNLLLSIVPFNRIGFRESL |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | NLKEKIFQFGIYGAKLGMLDGSEVEMVIGEPWVEIITADAVEGLKRNFTTDCLRTETNRFMVENFSWSDLYVRMGSLAWKDYLTSGTFNFTSKEYFLIMSLLIEARRYVDNVELRKLNLDPKKTHYCINRLARKGFIEYKTSEEAQKKNFIYKVRAIVDERGFVMRRVAEKQLLDTNRADLPGKKRMFEYRIDIGLYDNIREMILNSKDGIITEDLKNKLGVSSKIGYKLLNKIFNEEKDAVTRTEEFKGRIRRYRYHVGTKSSEEAFQEGGDGTRTVGYITSEERVRAIRKLMSTSPILQLDKRTYEKLQELTGWRYEFDRRTIIKSAVLAGFKIYKQKRGKEGKCSRYMIMRNEMVESDIRALDVSNCDFQESMSEFQRKIYNIFVNSPKFVEMDNGYIPLREERLKLLYRFLVNHMTSRGDESLRFDWEVVREMEFNLLLSIVPFNRIGFRESL | |||||||||||||||||||
1 | 2pffB | 0.07 | 0.05 | 0.81 | 0.91 | DisCoVER | -GGGGGGGGGGGGGGGG-GGGGGGGGGGGGGGGGGGG--GG--G---G--GGGGGGGGGGGGGGGGGGGGGGGGGGG-GGGGG-GGGGGGGGGGGG-GGGGGGGGGGGGGGGGGG--GG-------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG--GGGGGGGG----GGGGGGGGGGGGGGGGGGGGGGGGGGGGGG--G-----------GG-GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTFAGALAVVVFYRGMTMQVAVGRSNYGMIAI-------------NPGRVA-LQY--VVERVGKRTGWLV-EIVNYNVENQQ--Y---------VAAGDLRALDT-----TVLNFIIQKSLSGGGGGGGGG--GGG-GGGGGGGGGGGGGGGGGG----GGGGGGG-GGGGGGGGGGGGGGGGG- | |||||||||||||
2 | 2r7oA | 0.06 | 0.04 | 0.63 | 0.67 | DEthreader | YAKGKPLEADLENNKMTELFAEYTDSLMDPAILTSLS--SNLNAVMFWL---------GVPR--HNAKYRYVTANSIEMLMSVFSDYLIAKELIVLSYSNRSTL---KLVSSPMSMMPKIYSWSFHV-GFRKQKMDAALDQ----------GRRTRIIFILFQHVEKMLIYAHTREYAFYSQSNQLL-SY--V------------------------------------TD-VSQWDSSQHN--------LY-T-L-YVQYGAVASETAIANGDDAKGINLLYNYIVNRLRG--------------------------TNSTFK-VFDSEDFI----------I----------------------IALTEKAKLNYAPISLEKRQIALM-F--K----PSIESYVYNLLSIGCYLEINYAIKNGS----------------SPYTN---------- | |||||||||||||
3 | 2rgrA | 0.09 | 0.09 | 1.00 | 0.72 | CEthreader | KNAEIQAIKKIMGLQHRKKYEDTKSLRY--GHLMIMTDQDHDGSHIKGLIINFLESSFLGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWREEESHKFTWKQKYYKGLGTSLAQEVREYFSNLDRHLKIFHSLQGNDKDYIDLAFSKKKADDQYEPGTVLDPTLKEIPISDFINKELILFSLADNIVLYGCFKKNLKSELKVLAPYVSECTAYGEQSLAQTIIGLAQNFVYLLLPNGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQTGTIEEIEPLRYRMYGRIEQIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDDNIKFIITLSPEEMAKTRKIGFYEGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPRFNKEGKPYY | |||||||||||||
4 | 2xubA | 0.09 | 0.07 | 0.76 | 0.77 | EigenThreader | --------------------------------------------------------------------------MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQHNLVSYQVHK----RGVVEYEAQ-----------------CSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGKLTMSAVVKKVADRLTETYAEVSNTFVRLADTHFVQRCPSVDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMSEITTAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLPLEFVGKSGDSGGG--MYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQKEQKQVEDFAMIP--------AKEAKDMLYKMLSENF---MVNILSAARMLLHRCYKSIANLIERRQFET | |||||||||||||
5 | 6eu0P | 0.11 | 0.06 | 0.52 | 0.62 | HHpred | -------------------------------------------------------------------------------------------SDNAKTLHSQMMSGGALFTQQELQQMGGSLTDLMSIVQELLDKNLIKLVKQ--NDE--L--KFQGVLES-----------EA-----QK----------KATMAEEALVYSYIEAGREGIWSKTIKARTNLHQHVVLKCLKSLESQRY--VKSVKSVKFPTRK--IYMLYSLQPSVF--------TDGELDINSLLTIVWRFISENKNYSTTQEILEFITAAQVANVELTPSNIRSLCEVLDDKLEKVTHD--CYR----VTLESILQALEDEEEFSIFNYFKMFPA------------------------------------------------------------------------------- | |||||||||||||
6 | 6eu0P | 0.12 | 0.06 | 0.47 | 0.85 | MRFsearch | -------------------------------------------------------------------------------------------SDNAKTLHSQMMSKGALFTQQELQKQMGSLTDLMSIVQELLDKNLIKLVKQN------DELKFQGVLE--------------------------SEAQKKATMAEEALVYSYIEASREGIWSKTIKARTNLHQHVVLKCLKSLESQ--RYVKSVKSVKPTRKIYMLYS---LQPSVFTDG-----ELDIEFINSLLTIVWRFISENKNYSTTQEILEFITAAQVANVELTPSNIRSLCEVLVDKLEKVTH-----DCYRVTLE------------------------------------------------------------------------------------------------------- | |||||||||||||
7 | 6tgbB | 0.11 | 0.09 | 0.81 | 0.62 | FFAS-3D | ---------------HERIQSKDLASLSRDVTFEFINLDGISLLTQDMLSFTLTAFVELMDHGIVSWDTF-SVAFIKKIASFVNKSAIDISIQRSLAILESMVLNSHDLYQKVAQEITIG-----QLIPHLQ--------GSDQEIQTYTIAVINALF------------------LKAPDERRQEMANILAQKQLRSIILTHVIRAQRAINNEMAHQLYDPQDQAQRDIIFELRRIAFD--------------------RDYKKLGFINHVNTQTPPGMLAAKHHQDAYIRIVLENPFGRSSIELTKMLCEILKFTHDRSFEEFFCICIQLLNKTWKEMRATSEDFNKVM-------QVVKEQVMRALTTKPSSLDQFKSKLQNLSYTEILKIRQSERMNDFQSRPILELKEKIQPEI-----------LELIKQQRLNRLVEGTCFRKLNARRR- | |||||||||||||
8 | 6e9eA | 0.10 | 0.09 | 0.91 | 0.59 | SPARKS-K | DRADDLVNTLRSSLDKTTVYCKEADYLWKKY------RESIREVADALDGDNIKKLSKSIEIQEDKLRKCFISYAVSEFTKLIYLLTRFLSGKEINDLVTTLINKFDNIRLEIMDELGLDREGSTKYLAELVELNFVKSCSFDINAKRTMYRALDILGIESDKTEEDIEKMIDNILQIKKNNGRNFIASNVIDSRFKYLVRYIRETAKCKPAVRFVLNE--IPDAQIERYYEACREKLADMIAEI----------------KFENSDAGNYQKANVTSRTAEIKRKNQAIIRLYLTVMYIMLKVERDTKLYAESGLEVNIEKNKTNLTMAVMGVK----LENGIIKT-----------EFDKSFAEANRYLRNARWYKLILDNLKKSERAVVNEFRNTVCHLNAIRYFALYHYLIQKHLENRFADKKTYCKDFVKAYNLVRYKNLTIDGLFDKNYPG | |||||||||||||
9 | 1lvaA | 0.12 | 0.07 | 0.54 | 1.01 | CNFpred | ----------------------------------------------------------------------------------------------EKILAQIIQEHREGLDWQEAARASLSLEETRKLLQSMAAAGQVTLLRVE-----NDLYAISTE-----------------------------RYQAWW-QAVTRALEEFHSRYRPGLAREELRSRYFLPARVYQALLEEWSRE-----GRLQLA-----ANTVALAG--FTPSFSET-----------QKKLLKDLEDKYRVS---RWQPPSFKEVAGSF----NLDPSELEELLHYLVGVLVKIN--------DEFYWHRQ---ALGEAREVIKNLAST-----------GPFGLAEARDALG----SSRKYVLPLLEYLDQFTRRVGDKRVVVGN-------------------------- | |||||||||||||
10 | 5hb4B | 0.07 | 0.05 | 0.74 | 0.83 | DEthreader | -----------ASILHAAVQR-H---------------------------IKILRKWDK-DHFLIH--LIPVLAA------CLPVLGAAVRAWWIAEHNGFY-LD----GINLDEED-E-Q-RTKQFLDALKEG-F-----------------PDVLRRTDAGFLQW------MLRCLADN-CAAAHNFLLDSLTWSQIFKELEYFTTVCA-LECYLRLIAKLATIARKRLIMDEDFNLVDTILKSAIFY-LKALMWVAW--NPFTPGPQECMEMFREPYVVCFHPFSRVMEWL-F------VITSLI---------SIRAIQVMIKALELQETYFE-LVVLGKYCCLLEKITS-----DFLYACLRTIAHQLLGFIGPFDMQK------MDELRATNFLFHLIIDALNPSIFDFFDF--T------LNLLQAWANLLLVMIESNDFKSKMVLLWKL | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |