Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100
| | | | | |
| Seq | GGMDILSSAKVDRSVATGTIPTAPVTTDSVSDETTVRNAVTSADLHKLNGQPVPWANASTGSAGVIDTIVENSASGQVCRQFRTTRHSYQGIANFSGRTCLLGQGEWQLLSFQQ |
1 | 2l4vA | 0.04 | 0.04 | 0.89 | 0.81 | DisCoVER | | -PKKVPAAEAEP--REPIMGIYDAPLNNENGFDKEDLARFAVRE---------YNNKNNALLEFVRVVKAKEQVVSGMMHYLTVEVNDAGKKKLYEAKVWEQVMNFRQLQEFT- |
2 | 1pp0B | 0.08 | 0.07 | 0.84 | 1.00 | DEthreader | | STINQQSQEVMVDKIAK-FLHDAFAAVDLSKLAAIILNTFTN-LEEESS-SG--------------FL-QFNTNKKNSSWEYRVLFSVPFYSLVTTILITADIGLTKFAVQIDA |
3 | 4q35A5 | 0.07 | 0.05 | 0.79 | 0.72 | CEthreader | | ------------------------WANLNTKDTNVWEGDYQMVGRQGRGKADLMKQRGENRYTILDNGSFTSPGSDTWSVVGSEIIHDREQVAEIWNARFKVGPVPIFYSPYLQ |
4 | 4epaA | 0.05 | 0.04 | 0.86 | 0.67 | EigenThreader | | DAYVGWNDIKGRKLSISDGSPDPYLGDART----------------VDVLGNLSAGYLTDDWVYTRVAQGYKPSGVAEKSINYELGTRYADVTTFYTHTKDQSNAGKADATGVE |
5 | 4qanA | 0.13 | 0.10 | 0.74 | 0.31 | HHpred | | --------------------------LLKQGEYAKELKTLYGFLGTELYGKSRGKLNPEY-VYLDLIKVIPIE-TEETVKQYAGLYS-YNGNYLTGYTLCRQEDG-WQIQSLSA |
6 | 2mzvA2 | 0.07 | 0.05 | 0.74 | 0.60 | MRFsearch | | ----------------------RPVPVHDPVVQDAAHHAIKTIQERSNSLFP--------YELSEVVHANAEVVDTSAKFDMLLKVKRGGKEEKYKVEVHKSTEGGFNLKKVDL |
7 | 3hx8A | 0.13 | 0.10 | 0.75 | 0.52 | FFAS-3D | | -------------------------GQSAKEAIEAANADFVKAYNSKDPDARVDWQGADGISELKLTTLDVQESGDFAFESGSFSLKADSKLVDAAGKYVKGQDGGWKLYR--- |
8 | 4r80A | 0.07 | 0.04 | 0.63 | 0.94 | SPARKS-K | | --------------------------PSEEEEKRRAKQVAKEKILEQNPSSKV--------------QVRRVQKQGNT-IRVELEITENGKKTNITVEVEKQGN-TFTVKRITE |
9 | 4r80A | 0.03 | 0.02 | 0.62 | 0.69 | CNFpred | | ---------------------------SEEEEKRRAKQVAKEKILEQN-------------PSSKVQVRRVQKQ--GNTIRVELEITENGKKTNITVEVEKQ-GNTFTVKRITE |
10 | 5uc2A | 0.04 | 0.04 | 0.84 | 1.00 | DEthreader | | ----------HRAIY-YEFTNFRQTTFVNAQFPTRH-EELIGKAEAGQ--KFYQTTLFDRVVATTVVVGKQQAVSKDQVWPVTIAYFDKEQPYRINFKLYR----NGITRDLTD |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|