>PF16930 (554 residues) SLTINLVHLLVQQGVITRAQADGLIAQAEAETAEARRAAAPAAAAATATATAPTGDADDT KRVIYVPEVVKQQLREDIKQEVMKQARDENWAAPRAIPEWTQRFRLSGDLRFRYEGDFFP SGNAADGSFPDFNAINRGSPYDVSDSNPDYPPQLNADQDRERLRLRARLALDADLGESFT AGLRLATGNDSSPVSTNQSMGADGLGSKYALWLDRAFLTWEAPFHSPDATRPPDTQLAFT VGRFANPFFSTDLIWDDDLGFDGIMGQVSRRIGRITPFAVAGLFPVYNTDFNFSTNQPEK FKSDDKWLYGAQLGADWKITDAIKLKLAVAYYDFASIEGRLSSPYIPLSSSDAGDTDSTR PAFAQKGNTYMELRNIIPSLENNNGTINQWQYYGLATPFRELAFTGRLDFTHFDPVHVSL EIEAVKNLAYDEAAIDAKAVNNRVPSAPGDPAGSFDGGDFGWFARLNVGNPVLERFGDWQ ASIAYKYVESDAVVDAFTDSDFGLGGTNLKGYILGLSMGLSKRVNGRIRWLSADSIGGAA YSVDVFQFDINARF |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 | | | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | SLTINLVHLLVQQGVITRAQADGLIAQAEAETAEARRAAAPAAAAATATATAPTGDADDTKRVIYVPEVVKQQLREDIKQEVMKQARDENWAAPRAIPEWTQRFRLSGDLRFRYEGDFFPSGNAADGSFPDFNAINRGSPYDVSDSNPDYPPQLNADQDRERLRLRARLALDADLGESFTAGLRLATGNDSSPVSTNQSMGADGLGSKYALWLDRAFLTWEAPFHSPDATRPPDTQLAFTVGRFANPFFSTDLIWDDDLGFDGIMGQVSRRIGRITPFAVAGLFPVYNTDFNFSTNQPEKFKSDDKWLYGAQLGADWKITDAIKLKLAVAYYDFASIEGRLSSPYIPLSSSDAGDTDSTRPAFAQKGNTYMELRNIIPSLENNNGTINQWQYYGLATPFRELAFTGRLDFTHFDPVHVSLEIEAVKNLAYDEAAIDAKAVNNRVPSAPGDPAGSFDGGDFGWFARLNVGNPVLERFGDWQASIAYKYVESDAVVDAFTDSDFGLGGTNLKGYILGLSMGLSKRVNGRIRWLSADSIGGAAYSVDVFQFDINARF | |||||||||||||||||||
1 | 2o4vA | 0.17 | 0.10 | 0.62 | 1.81 | HHpred | -----------------------------------------------------------------------------------------KTGLEVATTDKEFSFKLGGRLQADYGRFDGYYTN--------------------------------NGNTADAAYFRAYLEFGGTAYRDWKYQINYDLSRN-V-------------GNDSAGYFDEASVTYTGF-----------NPVNLKFGRFYTDFGLEKLIADWVNVGTGIQASSVVG---GMAFLSGSVFSENNNDT----------DGDSVKRYNLRGVFAPLHEPGNVVHLGLQYAYRDLEDSAVDTRI------------RPRMGMRSNGNRGLFG--------GSS------AVEGLWKDDSVWGLEGAWALG-----AFSAQAEYLRRTVKAER-------------------DREDLKASGYYAQLAYTLTKPENIGAWELFYRYDSIKVEDDNIVSATREV--GDAKGKTHTLGVNWYANEAVKVSANYVKAKTDKIGDDSGDGLVMRLQYVF | |||||||||||||
2 | 2o4vA | 0.14 | 0.09 | 0.68 | 1.06 | SPARKS-K | ---------------------------------------------------------------------------GTVTTDGADIVIKTKGGLEVATTDKEFSFKLGGRLQADYGRFDGYYT-------------------------------NNGNTADAAYFRRAYLEFGGTAYRDWKYQINYDLSR---------NVGNDSA-----GYFDEASVTYT-----------GFNPVNLKFGRFYTDFATSSKWVTALERNLGIQASSVVGGM---AFLSGSVFSENNNDTD----------GDSVKRYNLRGVFAPLHEPGNVVHLGLQYAYRDL------------------EDSAVDTRIRPRMGMRGVSTNGGNDAGSNGNRGLFGGSSAVEGLWKDDSVWGLEGAWALG--AFSAQAEYLRRTVKAE---------RDRELTGEPRLYKLDG------AKFDTIKPENKEIGAWELFYRYDSIKVEDDNIVVDSATREVGDAKGKTHTLGVNWYANEAVKVSANYVKAKTNANGDDSGDGLVMRLQYVF | |||||||||||||
3 | 2o4vA | 0.13 | 0.08 | 0.63 | 1.03 | MAPalign | ---TDGADIVIKTKGGLEVAT---T-------------------------------------------------------------------------DKEFSFKLGGRLQADYGRFDGYYTNN--------------------------------GNTADAAYFRAYLEFGGTAYRDWKYQINYDL---------SR-NVGNDSAG----YFDEASVTYTGF-----------NPVNLKFGRFYTDFGLELTVN---DNGTGIQASSVV---GGMAFLSGSVFSENNN----------DTDGDSVKRYNLRGVFAPLHEPGNVVHLGLQYAYRDLEDS------------------------------AVDTRIRPNDAGSNGNRGLFGGSAEGWKDDSVWGLEGAWALG-----AFSAQAEYLRRTVK-------------------AERDREDLKASGYYAQLAYTLTGEIKPGAWELFYRYDSIKVEDDNIVVDSATREVGDAKGKTHTLGVNWYANEAVKVSANYVKAKTDKISDDSGDGLVMRLQYVF | |||||||||||||
4 | 5ldtA | 0.11 | 0.07 | 0.67 | 1.90 | HHsearch | ----------------------------------------------------------------------------------------------TPLEEAIKDVDVSGVLRYRYDTGNFDKNFLN--------------------------N-SNLNNSKQDHKYRAQVNFSAAIADNFKAFVQFDYNAV-DGGTGVD-N---ATNAEKGLFVRQLYLTYTNED----------VATSVIAGKQQIIWT--D--NGDGLVGTGVKVVNNSI-D--GLTLAAFAVDSFMAAEQGSDLLKKLDSIGNLYGAAAVG--SYDL-AGGQFNPQLWLAYWDQVAFF---YA---VDA-----AYSTTI----G-INWTLEGAYLGNSL------DSELDDKKTYANGNLFALKGSIEV-N--GWDASLGGLYYGDKEKAVVIEDQG-NLGSLAGTSRLNGDTGRNIFGYVTGGYTFNE-----TVRVGADFVYGGTKTEATT--------HLGGGKKLEARVDYKYSPKLNFSAFYSYVNLDQGESADHSTVRLQALYKF | |||||||||||||
5 | 2o4vA | 0.15 | 0.10 | 0.67 | 1.09 | FFAS-3D | -----------------------------------------------------TVTTDGDIVIKT-------------KGGLEVATTDKEF-----------SFKLGGRLQADYGRFDGYYTNNGN--------------------------------TADAAYFRAYLEFGGTAYRDWKYQINYDLSR--------------NVGNDSAGYFDEASVTYTG-----------FNPVNLKFGRFYTDFGLEKATSSKWVTAVGTGIQASSVVGGMAFLSGSVFSE-----------NNNDTDGDSVKRYNLRGVFAPLHEPGNVVHLGLQYAYRDLEDSAVDTRIRPRMGMRGVSTNGGNDAGSNGNRGLFGGSSAVEGL---------------WKDDSVWGLEGAWALG-----AFSAQAEYLRR-------------------TVKAERDREDLKASGYYAQLAYTKPENKEIGAWELFYRYDSIKVEDDNIVVDSATREVGDAKGKTHTLGVNWYANEAVKVSANYVKAKSNANGDDSGDGLVMRLQYVF | |||||||||||||
6 | 6r2qB | 0.09 | 0.08 | 0.84 | 1.00 | MAPalign | -TVGVGVGYNANAFGTSNEVA--GKLDAD---------------------------------------VTFRGEKGYRASVEAYQLGMDGGRLEVNGKQGQYNVNVNYRQIATYSNALTPYSGVGSDNLTLP------DNWVTAGSSSQMPLLMDSLNSLELSLKRERTGLGFDLWSTHVSYMREEKT---------GLKKASMMLAEPVDYTTDSIEAGIKLK-------GDNWFTALNYNGSIFAQTSGSIALDPDNQSHTVSLMGQYNDSTNVLSARLLTGQMSQDQALYGYQVPTEALDAKVDLIGLNLKVVSKVTNSLRLSGSYDYNDRDNNTQFKVAADYRITRGMKLDGG--YDFRRRETTDENTVWARFRVNSFETWDMWVKGSGQRDGNRDRTQVEARVTHSPIESLTIDFGARYALDDYTD--------------------TVIGLTESKDTSYDANISYMLLENKLRMGLDYTYSDSNSNTQ----VRQGITGDYYFAKVHNINLYAQYQAALRFDYKIENYKDNGDNSHDYTAQMIMLSMSY | |||||||||||||
7 | 2o4vA | 0.17 | 0.11 | 0.64 | 1.76 | HHsearch | ----------------------------------------GT--------V---TTDGADIVIKT------------------------KGGLEVATTDKEFSFKLGGRLQADYGRFDGYYTN--------------------------------NGNTADAAYFRAYLEFGGTAYRDWKYQINYDLSRN-V--------G-----NDSAGYFDEASVTYTGF-----------NPVNLKFGRFYTDFGLEKLIADWVNVGTGIQASSVVG-G--MAFLSGSVFSENNNDT----------DGDSVKRYNLRGVFAPLHEPGNVVHLGLQYAYRDLEDSAVDTRI------------RPRMGMRSNGNRGLFG--------GSS------AVEGLWKDDSVWGLEGAWAL-----GAFSAQAEYLRRTVKAERD-------------------REDLKASGYYAQLAYTLTKPENIGAWELFYRYDSIKVEDDNIVSATREV--GDAKGKTHTLGVNWYANEAVKVSANYVKAKTDKIGDDSGDGLVMRLQYVF | |||||||||||||
8 | 5ldtA | 0.13 | 0.08 | 0.63 | 1.09 | FFAS-3D | ----------------------------------------------------------------------------------------------TPLEEAIKDVDVSGVLRYRYDTGNFDKNFLNNS---------------------------NLNNSKQDHKYRAQVNFSAAIADNFKAFVQFDYNAVDGGTGVD-----NATNAEKGLFVRQLYLTYT----------NEDVATSVIAGKQQLNIIWTD-NGVDGLVGTGVKVVNN-SIDGLTLYGAAAVGSYDLAGGQFNPQLWLAYWDQVAFFYAVDAAYSTTIGINWTLEGAYLGNSLDSELDDKKTY----------------------------------------------------ANGNLFALKGSIE---VNGWDASLGGLYYGDKEKDQGNLGSLLAGEEIFYTTGSRLNGDTGRNIFGYVTGGYTFNE-----TVRVGADFVYGG--------TKTEATTHLGGGKKLEAVVDYKYSPKLNFSAFYSYVNLDTNESADHSTVRLQALYKF | |||||||||||||
9 | 4geyA | 0.09 | 0.06 | 0.65 | 1.00 | MAPalign | ------E---AFSSESKW-TGD-WGGTRTELLDK--------------------------------------------------------------------GYDFTLDYVGEVAGNLHGG---------------------------------YNDDKTARYSDQFALGAHLDLQHDAEFKAITER---------SGRNLSSSVQEVWGQTWRLTQWIKQK-Y------FDGALDVKFGRFGEGEDFNSFFQVGNWIWYNSQWALRVKYNITPAFFVQVGAFE-QNPSNL-ETGNGFKLSGSGTKGAIP-EAVWSPKV-NGLPGEYRLGYYYSTAK-------------------------------ADDVYDDVNGNPQA-----LTGEAFKSHSSKHGWWVVAQQQVTADVNRGLSLFANFTVHD------------------------KATNVVDNYQQVGLVYKGA-FDARPKDDIGFGVARIHVNDDVKKRAELLNVPLQRTEYNAELYYGFHVTNWLTVRPNLQYIKSGVDEVDNALVAGLKIQSSF | |||||||||||||
10 | 1hxuA | 0.11 | 0.06 | 0.57 | 1.55 | HHsearch | ---------------------------------------------------------------------------------------------AEIYNKDGNKVDLYGKAKGLHYFSKGNGENS-------------------------------YGGNGDMTYARLGFKGETQINSDLTGYGQWEYNFQGN--NS--EGA----DAQTGNKTRLAFAGLKYA-----------DVGSFDYGRNYGVVYDTDMLFGGDTFVKGGVATYRNSNDGLN--FAVQYL-GKNERDT--------ARRSNGDGVGGSISYE--YE---GFGIVGAYGAADRTNLQEA------------------------QP------------------------LGNGKKAEQWATGLKYDAN-----NIYLAANYGETRNATPITNKF--T----------NTSGFANKTQDVLLVAQYQ------FDGLRPSIAYTKSKAKDVEG-------IGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNVGSDDTVAVGIVYQF | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |