>PF16883 (197 residues) LLLIVVAGLYYIIYLTAVMYSEKIVVLPIIIYAIVFVIIGITYIFIGDSYDQLTNFNVIL YMGSLFYAWMAIRNLWNRPLLLKYKNITDSSSGIVNKSEYNSVESLRINIEIAKYKGIIS LIVAIVLTVLMTLKSTPQITAETRDLSISFFILSLFIIIIFAVWDLFIRVRKGAFAFVVI RPILFSCWLFILNMILS |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | LLLIVVAGLYYIIYLTAVMYSEKIVVLPIIIYAIVFVIIGITYIFIGDSYDQLTNFNVILYMGSLFYAWMAIRNLWNRPLLLKYKNITDSSSGIVNKSEYNSVESLRINIEIAKYKGIISLIVAIVLTVLMTLKSTPQITAETRDLSISFFILSLFIIIIFAVWDLFIRVRKGAFAFVVIRPILFSCWLFILNMILS | |||||||||||||||||||
1 | 3rkoB | 0.08 | 0.07 | 0.84 | 1.03 | CNFpred | AATMVTAGVYLIARTHGLFLMT-PEVLHLVGIVGAVTLLLAGFAALV--QTDIKRVLAYSTMSQIGYMFLALGVQ-----------------------------AWDAAIFHLMTHAFFKALLFLASGSVILACSIPLVYLCFLVGGAALSALTAGFFSKDEILAGAMANGHINLMVAGLVGAFMTSLYTFRMIFIV | |||||||||||||
2 | 4a01A | 0.06 | 0.06 | 0.94 | 1.00 | DEthreader | IFTVSFLLGGVTSLVSGFLGMKIAMGLLAANGLLVLYIAINLFKIYYGDD-WGGLFEAIT-GYGLGGSSMALFGRVGGYTKAADVGADVGKRIDPRNPAVIADN-GDNVGDIGMGSDLFGSYAESSCAALVVASISFNFGVGAFVRASI--L-GAMLPYWFSAMTMKSVGSAADPLKTSGPSLNILIKLMAV----- | |||||||||||||
3 | 3o7pA2 | 0.06 | 0.04 | 0.70 | 0.54 | DisCoVER | ------------------------------------------QSDNQGSFSASLSRLA-HWRWAVLAQFCYVGAQT--ACWSYLIRYAVEECLSAFAGGHVGLIAL---T-LCSAFMSIQYPTIFLGIKNLGQDTK-----YG---SSFIVMTII-GGGIVTPVMGFVSAGNIPTAELIPALCFAVIFIFARFRSQ- | |||||||||||||
4 | 3d4sA | 0.06 | 0.05 | 0.74 | 0.83 | DEthreader | ILVTNYFI--------------------------T-SLACADLVMGLAVVGCEWTSIDVLCVTASIWLCVIAVDRYFAITSPFK----------------------Y--Q-SLLTKKARVIILMVWIVSGLTSFPIYRTNYAASIVFYVPLVIMVFVYSRVFQEAKRLWAYKCLKEHKALKTLGIIMGTFTLCWNWI | |||||||||||||
5 | 5y50A1 | 0.08 | 0.08 | 0.90 | 0.39 | CEthreader | GAMIAVNSSMYVLQVISIMMVGHLSVTGFSVVFGLASALETLCGQANGAKQYEKLGVHTYTGIVSLFLVCIPLSLLWTYIGDILSLIGQ------------DAMVAQEAGKFATWLIPALFGYATLQPLVRFFQAQ--------SLILPLVMSSVSSLCIHIVLCWSLVFKFGLSLGAAIAIGVSYWLNVTVLGLYM | |||||||||||||
6 | 5unfA | 0.05 | 0.05 | 0.98 | 0.73 | EigenThreader | VKDALTKMRAAALDAQKA---TPPKLRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAIPILYYIIFVIGFLVNIVVVTLFCCQKGPKKVSSIYIFNLAVADLLLLATLPLWATYYSYSVIYCLSSEKYAQWSAGIALMKNILGFIPLIFIATCYFGIRKHLLKTNSVLKMAAAVVLAFIICWLPFHVLT | |||||||||||||
7 | 5tj5A | 0.10 | 0.08 | 0.79 | 0.26 | HHpred | -LLFMQGIFGYLSVCIVYKWAVAPGLLNMLINMF-----LSPGTILYPHQAKVQVFLLLMALVCIPWLLLV------KPLHFKFDIMIHQ-----------VIHTIEFCLTASYLRLWALSLAHAQLSSVLW-TMTIQI---AFGFGFVGVFMTVALFAMWFALTCAHWVES---MSKPYEPFAFE----------- | |||||||||||||
8 | 3mktA | 0.11 | 0.11 | 0.97 | 0.25 | MRFsearch | --IFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVF----ETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEIAANVGLMTGLATACITALLTVLFR | |||||||||||||
9 | 4or2A2 | 0.10 | 0.09 | 0.93 | 0.92 | FFAS-3D | AIAFSCLGILVTLFVTLIFKSSSRELCYIILAGIFLGYVCPFTLIAKPTTTSCYLQRLLVGLSAMCYSALVTKTN-------RIARILARKPRFMSAWAQVIIASILISVQVVAPLGYNGLLIMSCTYYAFKTRNVPANFNEAK-----YIAFTMYTTCIIWLAFVPIYFGSNYKIITTCFAVSLSVTVALGCMFT- | |||||||||||||
10 | 5xjjA | 0.08 | 0.08 | 0.95 | 0.85 | SPARKS-K | WLIPVLFAQAIVIPLTRFLLTQGVLPLLYTAVTTLLFHVFVCWVFVLVFVLGSNGPAMATSVSFWFYAVILSCYVRFS---SSCEKTRGFVSED-------FVSCVKQFFQYGVPSAAMICLEWWLFELLILCSLETSVLSICLTTETLHYVISSGVAAAVSTRVSNNLGAGNPVSVLAGLCLWLVESAFFSILLFT | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |