>PF16784 (200 residues) GVELEQSHIDLLENGYPLKAEVEVPDNKKLSIEQRKKIFAMCRDIELHWGEPVESTRKLL QTELEIMKGYEEISLRDCSMKVARELIELIIAFMFHHQIPMSVETSKLLSEDKALLYWAT INRNCVICGKPHADLAHYEAVGRGMNRNKMNHYDKHVLALCRQHHNEQHAIGVKSFDDKY HLHDSWIKVDERLNKMLKGG |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | GVELEQSHIDLLENGYPLKAEVEVPDNKKLSIEQRKKIFAMCRDIELHWGEPVESTRKLLQTELEIMKGYEEISLRDCSMKVARELIELIIAFMFHHQIPMSVETSKLLSEDKALLYWATINRNCVICGKPHADLAHYEAVGRGMNRNKMNHYDKHVLALCRQHHNEQHAIGVKSFDDKYHLHDSWIKVDERLNKMLKGG | |||||||||||||||||||
1 | 1pc6A | 0.19 | 0.11 | 0.56 | 1.30 | HHpred | -SPAHQQNAIHAVQQPTKPIVVTI-QERNRSLDQNRKLWACLGDVSRQVELDAESWKCVFTAALKQQDGNGGQSTSRMRVGEFAELLELIQAFGTERGVKWSDEARLALEWKARW------------------------------------------------------------------------------------- | |||||||||||||
2 | 1pc6A | 0.19 | 0.10 | 0.52 | 0.75 | DisCoVER | FEIRSPAHQQNAIHAVPTKPIVVTIQERNRSLDQNRKLWACLGDVSRQVWLDAESWKCVFTAALKQQFVVIGQSTSRMRVGEFAELLELIQAFGTERGVKW--SD----------------------------------------------------------------------------------------------- | |||||||||||||
3 | 6u8yH | 0.04 | 0.04 | 0.81 | 0.83 | DEthreader | YFAALLVIAVVSFLMAFLLATIATGDIFNLFVFMEITAISAYALTAYEAAEASMKYIVLGGI-G-------SSFFLVGVLLLIIFGLAVEAELNAWAPAYTVMFVVKAGLYAAI-ATLTVVAEA----MIAYSSGQ--------------------HHVKMLTIGGIAT-GVPLFNVF--WSKRIIANLWPVALVLFA-- | |||||||||||||
4 | 1pc6A | 0.20 | 0.12 | 0.57 | 0.72 | CEthreader | AHQQNAIHAVQQILPDPTKPIVVTIQERNRSLDQNRKLWACLGDVSRQVELDAESWKCVFTAALKQQDVVPGQSTSRMRVGEFAELLELIQAFGTERGVKWSDEARLALEWKARW------------------------------------------------------------------------------------- | |||||||||||||
5 | 6elqX | 0.04 | 0.04 | 0.94 | 0.57 | EigenThreader | SVDPVIPNLYRKAREEGISTCRRIDPFITARNLLRQVTAGAAAHVDHAYDVLEVLEQIAQEIREALHQTTMGMDA---DPVNLILKTIRLGLVDGFAGLKLATDLQDVTEANLGVLKEDYVNIIVHGHVPLLSEKIVEWSRKLEDEAKKAGAKGILAGICCTGNEVLMRQG----------VPLATNIVRMAIESYQKRN | |||||||||||||
6 | 3plwA | 0.21 | 0.09 | 0.42 | 1.06 | HHpred | ---------------------------------------------------------------------------------------------------------RTPTAEERRIANA-LGALPCIACYMHGVSLHHIA--GRTA---PG--CHKKQLPLCRWHHQHAAPGGKKEFTLLNKSEMELL-ADAYEMANIMH- | |||||||||||||
7 | 1pc6A | 0.20 | 0.11 | 0.55 | 0.82 | MRFsearch | --PAHQQNAIHAVQQKPIVVTIQE---RNRSLDQNRKLWACLGDVSRQVELDAESWKCVFTAALKQQDVVPGQSTSRMRVGEFAELLELIQAFGTERGVK---------WSDEARLALEWKARW---------------------------------------------------------------------------- | |||||||||||||
8 | 1pc6A | 0.18 | 0.10 | 0.55 | 0.78 | FFAS-3D | -----IHAVQQILPDPTKPIVVTIQERNR-SLDQNRKLWACLGDVSRQVEWDAESWKCVFTAALKQQDVVPNQSTSRMRVGEFAELLELIQAFGTERGVKWSDEARLALEWKARW------------------------------------------------------------------------------------- | |||||||||||||
9 | 1pc6A | 0.18 | 0.10 | 0.55 | 0.69 | SPARKS-K | RSPAHQQNAIHAVQQILP------DQERNRSLDQNRKLWACLGDVSRQVELDAESWKCVFTAALKQQDVVPNQSTSRMRVGEFAELLELIQAFGTERGVKWSDEARLALEWKARW------------------------------------------------------------------------------------- | |||||||||||||
10 | 3bxzA | 0.07 | 0.05 | 0.73 | 0.56 | CNFpred | --------------------------------RTLRRMRKVVNIINAME-LSDEELKGKTAEFRARLEKGEV------LENLIPEAFAVVREASKRV-------FGMRHFDVQLLGGMVLNERCIAEMRTEGKTLTATLPAYLNA-------KGVHVVTVNDYLAQRDAEN-NRPLFEFLGLTVGINLPGMPAPAKREAY | |||||||||||||
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |