Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | VRRQVESVAKERLRAAKDDDVRMADAHSIPPNIDDLAIADHIMPRTPRRKKSVPTVTFNDTLDMDNPVTPTRRDEKMMEPYDPDPFLNVDLDNVRSRSRRGSLAPPTPTSIQESPTIPANLDFSKSPGGSPLSPSPSVSISKHASTPPEVPFDFKRPRLVGR |
1 | 2xkxA | 0.11 | 0.06 | 0.56 | 1.08 | MRFsearch | | --DVMHEDAVAALKNTY---------------------------------DVVYLKVAKPSNAYLSDSY------------------------------------APPDITTSYSQHLDNEISHSSYLGTDYPTAMTPTSPRRYSPVAKDLLIPREPRRIVI |
2 | 4nl6A | 0.09 | 0.08 | 0.93 | 1.28 | SPARKS-K | | DKCSAIWSEDGCIYPATIASIDFKRETCVEQNLSDLLSPICEVANNIEQNAQENE---NESQVSTDESENSRSPGNKSDNI----KPKSAPWNSFLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPP----FPSGPPIIPPPPPICPDSLDD |
3 | 5yfpC2 | 0.04 | 0.03 | 0.73 | 0.83 | DisCoVER | | -------------------YNVALMEHIERLLVA--ELAEDALETG-CPHLLEIHFLTSRDFQEQVVVMAKETKLFSRLSGII--------------------SKFKLLDGLYDIVEMSLAILFKIYDLEEREDLRIEARNQEIMSGTISTRTAPRGYKHF- |
4 | 3wvoA | 0.09 | 0.07 | 0.78 | 0.83 | DEthreader | | --------LPVQYEKELSLEFLLAILH--GGPEEWAELWLPFDCIASYLEQ---------RFDLFAAALVHAYD--GLGGI---LVEGANLYET----------LYTWQSDLAPHNKNHEPMTAWRRSPREALPRILDWVARLVGFLPED-YFIRTRLHVVD |
5 | 1iznA | 0.07 | 0.07 | 0.99 | 0.54 | CEthreader | | FAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAPNGFCTVYGKSIDGQQTIIACIESSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQ-VSSDVQTAKEFIKIIEN |
6 | 2vq2A | 0.06 | 0.06 | 0.95 | 0.45 | EigenThreader | | --------ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGYFDKALADANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQS |
7 | 5e7tB | 0.17 | 0.06 | 0.36 | 0.32 | HHpred | | ----------------------------------KQELGS--IAT--PYMPSASEVTTNPVSSTVSSDEMKYRVLD-GTPVGGSKLLSFDLENLKAGT---------------------------------------------------------------- |
8 | 2pffB | 0.10 | 0.02 | 0.18 | 0.62 | MRFsearch | | -TSKAAQDVWNRADNHFKD------------TYGFSILDIVI------------------------------------------------------------------------------------------------------------------------ |
9 | 4bmlA | 0.09 | 0.09 | 0.98 | 0.41 | FFAS-3D | | TRAEVSKQIGEALATHYDERIARVLAKASAEASPVTGEPGGFHVNIGAGNTNDAQAIVDGFAVLDERSAPQEGRVAVLSPRQYYSLISSVDTNILNREIGNSKSNNLAGLYGQDLSSAAVTGENNDYQVDASALAGLIFHREAAGCIQSVAPTIQTTS---- |
10 | 6em5m | 0.12 | 0.11 | 0.93 | 1.12 | SPARKS-K | | SKNEAKRVMKIVRAIREG----------RIIPPKKLKEMKEKEKIENYQYDLWGD-STETNDHVMHLRAPKLPPPTNEESYNPPEYLLEAWENTEYSERERNFIPQKYSALRKVPGYGESIRLAPRVRKNKLNIDPNSLIPELPSPKDLRPFPIRCSTIYAG |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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