>PF16628 (186 residues) KPSSGKTPVPLQSKDGYTDVGSQYVHEISQQHDRQQSLTEQLEAGKMRSIIVDDSDRTTT QFNNSSPTGVGSSRGSWSKRSWPNTGHTAYITDHITKSDYRDVPSIHELPREGHPKTDYQ IVPPIRELSHGTAHGKPGVSLFQGGIDQRPALATNVDTSSPQAQARMALSIEHQLSARTV PGEETE |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | KPSSGKTPVPLQSKDGYTDVGSQYVHEISQQHDRQQSLTEQLEAGKMRSIIVDDSDRTTTQFNNSSPTGVGSSRGSWSKRSWPNTGHTAYITDHITKSDYRDVPSIHELPREGHPKTDYQIVPPIRELSHGTAHGKPGVSLFQGGIDQRPALATNVDTSSPQAQARMALSIEHQLSARTVPGEETE | |||||||||||||||||||
1 | 1js9C | 0.04 | 0.02 | 0.61 | 0.81 | DisCoVER | -------AIAGY-------SISKWEASSDAITAK-ATN--AMLKVGRVLLWL----GLLRIKACVAEKQAQAEAAFVALAVADSSEVVAAMYTDAF-------RG--------------ATLGDLLNL--------QIYLY----ASEAVPAKAVVV-HLEV-EHV-RPTF--------------- | |||||||||||||
2 | 4cr2Z | 0.09 | 0.08 | 0.80 | 0.83 | DEthreader | VIQLAYILAAQKTS-EYEQTGPKPE-Y-LSVFSSAGNLASSFSAVASGSYQWN----LDGL-L-GALLGI-VEPALLLQILGAFAGS----------AAMALARF-L---AIVLGSAYTGLLAGIVSVDPQMFMCGAG-----LFITALLHGTMTMDVFNHVLNKVTLASIL--T-AV-SF----- | |||||||||||||
3 | 6tnnW | 0.11 | 0.11 | 0.95 | 0.48 | CEthreader | DKPEKSLLAPLHKKGGRNNQGKLTVRHQGGGHKRQYRVIDFKRDKDGIPGRVATVEYDPNRSANIALINYADGEKRYILAPKGIQVGTEIMSGPEADIKVGNALPLINIP-------VGTVVHNIELKPGKGGQLVRSAGTS---AQVLGKEGKYVLVRLNSGEVRMILSACRASIGQVGNEQHEL | |||||||||||||
4 | 4nl6A | 0.06 | 0.06 | 0.97 | 0.62 | EigenThreader | TGQSDDSDIWDDTAKNGDICETSGKPKTTKCSAIWSEDGCIYPATIEQNAQENENESQVSTDESENSRSPGNKSDNIKPKSAPWNSFLPPPPPMPG-----PRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGPPIIPPICPDSLDDADALGSMLISWYMSGYHTGYYMGFRQNQKEGRCS | |||||||||||||
5 | 2gtqA2 | 0.16 | 0.09 | 0.58 | 0.30 | HHpred | --------------------------------------------------------TVAEKYGE-AQN-THEWRDKFSDDKYFALVGSSRRSDTL--------QQVRTA--LQHPKFSLENPNKARSLI--GSFS-RNVPHFHDGSGYRFIADKEIDRFNPQVAARLVQAFNLCNK-LE------- | |||||||||||||
6 | 2pffB | 0.12 | 0.03 | 0.26 | 0.80 | MRFsearch | ----------------------------------------------VRVIVAGTLINPDDDYGFKQGGGGGGGGG----------------------------------------------------------------------------------GMDLYKTSKAAQDVWNRADN--------- | |||||||||||||
7 | 1nwxT | 0.10 | 0.10 | 0.99 | 0.43 | FFAS-3D | --AKPRTPKQKLDESNKENLDRKAFDRAFRQQSTTGLFDITVEGGETFPALVKAVQMDKRKRAVTYGEPVEVSVPVHTTGRSQGEVQGGLVDIVVHNLQIVAPGPIPQELVVDVTKMNIGDHITAGDIKLPEGCTDPELTVVSVLPPRLTAEELEAEVQAAQVAGLVAAVLEGDASLEEVKAEASE | |||||||||||||
8 | 7abh0 | 0.09 | 0.08 | 0.81 | 0.99 | SPARKS-K | KEKPSFELSGALLEDTNTFRGVVIKYSEPPEARIPKK--------RWRLYPFKNDEVLPVMYIHRQSAYLLGRHRRIADIPIDHPS--------CSKQHAVFQYRLVEYTRAD-GTVGRRVKPYIIDLGSGNG-------TFLNNKRIEPQRYYELKEKD-----------VLKFGFSSREYVLL- | |||||||||||||
9 | 5xtcU | 0.21 | 0.04 | 0.20 | 0.00 | CNFpred | KATPYNYPVPVRDDGNMPDVPSHPQDPQGPSLEWLKKL---------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
10 | 6hraA | 0.10 | 0.08 | 0.76 | 0.83 | DEthreader | LNMLLALF-----------LSWLSYSFNANSSHNNQMAIF------C--FGVMGD-RRQGRMLLSVFGGVGSGL-------VLLAVAGEYIEMLTALAILVTPTLVLMGLAMTDRAMLGEVLYAVS-----------S-AANNN--GSAFA---GLSANSPFWNCLLAFCMFVGRFGVIPMAIALV | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |