Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | LNRPLVLLSLVMVVAFVFTHQSDFSSGAVGKYVAERAETNSLAKWVHENQFKFLGLAIFAPAVLNSPEKMRVVLGLATLLWVMLVPQASVLEYVLQALALHSYFRVRLQQSRLFIMVVVVFLYF |
1 | 3ripA2 | 0.08 | 0.07 | 0.96 | 1.00 | DEthreader | | KKDLLGRGELFQAFIDTAQ-HML-VTEH-VNFQ-SADNLL-LLHGLSLYNVVFKYLLSVRRVQAELQWRMAFLVDNLQYYLQVVLQFFSLAQSFILLKPVFHCLNEIQSSLLFKILSSVRNHQI |
2 | 3rceA1 | 0.06 | 0.05 | 0.81 | 0.88 | DisCoVER | | RLKD--IFTLLLSPIFIMIYLWWYPSSYNFAMIGLFGLYTLVF--HRK-EKIFYLAIALMIIALSML--AWQYKLALIVLLFAFKEEINFYMIWALIFISI-SILHLS---------------- |
3 | 5cwpA | 0.09 | 0.07 | 0.80 | 1.00 | DEthreader | | ---------LAAVRALEAAER-------A---V------RLAVEAAEVLKLIVEAIEAAVRALEAAEGPVRELARELVRLAVEAAEEEVNEALKKIVKAIQEAVESLARERVREAVERAEEVQR |
4 | 3qnqA1 | 0.09 | 0.09 | 1.00 | 0.54 | CEthreader | | VAEQRHLLAIRDGLVLTMPFLPGYSEFMASLFGKNWNVALGYPVSATFNIMALIAVFGIAYRLGEYYKVDALASGALSLVTFLLATPFQMIIAIISTEIYRFLVQKTRSFAALIPGFIVVTVVW |
5 | 3qnqA1 | 0.08 | 0.08 | 0.98 | 0.73 | EigenThreader | | VMPVAGKVAHLLAIRDGLVLTMPFL---IIGSIFLIISTLYPVSATFNIMALIAVFGIAYRLGEYYKVDALASGALSLVTFLLATPSQGLFVAMIIAIISTEIYRFLVQKPGFIVVTVVWIIRL |
6 | 6wc9A | 0.10 | 0.08 | 0.80 | 0.29 | HHpred | | ---AVYLMTFLIVTVAWAAH--T----RLFQVVG---KTDDTLALLNLACMMTITFLPYTFSLMVTFPDVPLGIFLFCVCV--IAIGQAIVGYAF--------HFPHLLKERVEAFSDGVY--- |
7 | 6s3kB | 0.10 | 0.10 | 0.98 | 0.37 | MRFsearch | | --LLAILFSGITVLAYGYGTAPKPDETVVSQIASETFG-RNVFYYVIQGVTSLILVLAANTGFSAFFSNGIIFLGFASIVLIILFGVGVFIPFTLSQTGMCMKWIKQKMLINSCGALISFMVLS |
8 | 3kcuA | 0.18 | 0.18 | 0.99 | 0.63 | FFAS-3D | | MAKLVGGICFSLGLILCVVCGADLFTSTVLIVVAKASGRITWGQWLNVYFGNLVGALLFVLLMWLSGEYMTAQWGLNVLQTADHKVHHTFIEAVCLGIAVWMSYSGRSLMDKAFIMVLPVAMF- |
9 | 5cwfA | 0.10 | 0.10 | 0.96 | 0.60 | SPARKS-K | | MSDEMKKVMEALKKAVELAKKNNDD-----EVAREIERAKEIVEALRENMAKVMLALAVLLAAKNNDDEVAREIARAAAEIVEALREEMAKVMLALAKAVLLAAKNNDDEVAREIARAAAEIVE |
10 | 3rkoB | 0.17 | 0.15 | 0.92 | 0.88 | CNFpred | | MAGPTPVSALIHAATMVTAGV-----YLIARTHGLFLMTPEVLHLVGIVGAVTLLLAGFAALVQTDIKRVLAYSTMSQIGYMFLALGVQAWDAAIFHLMTHAFFK-----ALLFLASGSVILAC |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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