Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | | 20 40 60 80 100 120 140 160 180 200 220 240 260
| | | | | | | | | | | | | |
| Seq | GDDDKPFIPELNKLTSVTCTKNGNAFFNANITYDQDKQINRIILNTEGNQFTDNYIIVDKTISVSGVKMIDGSPTNPFVHTVYTLSGNMIAAKEEKSENKYMSNAVYTAVENRYTYSSNWLKSVSQIIQWPNEDGSGYQVRELGEVDRYSWENGNAVHYAYLPQKEITYEYNSQLRPENFPFRVVNSFQPVGFDVISPLNLLYGKMNQNLPTRAYWYKVSDATDICAEYTFRYTLTGDYITGMTIEEKINPVNGATAENNTYEYEFIYNFVVE |
1 | 4ghbA | 0.09 | 0.08 | 0.84 | 1.00 | DEthreader | | -------PTTPFSKIELKEVIESPVTATHTYLYNSAGRLTGYTGKQSEIENTTTVEYKD-HQAVITDEA-------GTVSTYTLNDKGYATTCTSQD--------AGNTRTYTFSYLINYLENITEKLD----------DGKEYSFITIDYSNFRALRIQQKFEHNSTATTPSNEIANIEIPSFITDYPLSHAVAI-YGKILGE-PANYLITQLIPDS---ESEETTTYTYTLDNR-GIVTSCHAVVRHI--RNGYEQDYTRTVNYTIE---- |
2 | 6h3iF | 0.06 | 0.04 | 0.76 | 1.00 | DEthreader | | ----YAFAEDA-------------------------QGLSISYTPYLDISLGQVTYYNKIAFAGSFRYFGFGGINPNEFALDGSYSLKSMAAARYIRSNLKVIAAAGSFAVDVAGFYQSRAGFNIQNGKISYDHDDLSANFLPANLRVGGGFDFGVSLELTKEITYSAAAEYMYQD---A----------------------------FAMRLGYYHESPMAKQFFSLGAGFKY---SMIKVDVSYLFSASK--VKNPLENTLRFSLTFNFGD |
3 | 4ghbA | 0.11 | 0.10 | 0.83 | 2.51 | HHpred | | ------TYPTPFSKIELKEVISDAVTATHTYLYNSAGRLTGYTGKQSGIENTTTVEYKDHQAVITDEA--------GTV-STYTLDKGYATTCTSQDAGN--------TRTYTFSYLIKYLENITEKL-----D--DG---KEYSFITIDYSNRALRIQQKVDTFEHNSTPSGNANISEIPSL--FITDPLS-HAVAIYGKILGEPANYLITQLIP--DSE-SEETTTYTYTLDNRG-IVTSCHAVVRHIRNGYEQDYTRTVNYTIE------ |
4 | 4ghbA | 0.09 | 0.07 | 0.81 | 1.81 | DisCoVER | | ----TYPTT-PFSKIELKEVIEQPVTATHTYLYNSAGRLTGYTGKQSEIENTTTVEYKDHQAVITDE--------AGTVSTYTLNDKGYA-TTCTSQD--------NTRTYTFSYLIKYYLENITE-KLD-----------KEYSFITIDYSNFRALRIQQKVDHNSTATTPSEIAN-ISEIPSITDYPL--SHAVAIYGKILGEPANYLITQLIPD-----SEETTTYTYTLDNR--GIVTSCHAVVRHIRN---EQDYTRTVNYTI----- |
5 | 4ghbA | 0.08 | 0.07 | 0.82 | 1.12 | MRFsearch | | ------------SKIELKEVIEQPVTATHTYLYNSAGRLTGYTGKQFEIENTTTVEYKDHQAVITDEA--------GTVSTYTLNDKGYATTCTSQDA--------GNTRTYTFSYLIYYLENITEKLD----------DGKEYSFITIDYSNRALRIQQKVDTFEHNSTATTIANISEIPSLFITDY--PLSHAVAIYGKILGEPANYLITQLIPDS---ESEETTTYTYTLDNR-GIVTSCHAVVRHIR----NGYEQDYTRTVNYTIE-- |
6 | 4ghbA | 0.09 | 0.08 | 0.85 | 1.71 | SPARKS-K | | ---TYPT-TPFSK-IELKEVIESPVTATHTYLYNSAGRLTGYTGKQFEIENTTTVEYKDHQAVITD--------EAGTVSTYTLNDKGYATTCTSQDAGN--------TRTYTFSYLINYLENITEKL------DDGKE----YSFITIDYNFRALRIQQKVDTFEHNSTATGNEIANISEIPSLFITDYPLSHAVAIYGKILGEPANYLITQLIPDSESEE---TTTYTYTLDNRG-IVTSCHAVVRHIRNGYEQDYTRTVNYTIE------ |
7 | 2ynkA | 0.06 | 0.05 | 0.96 | 1.05 | MAPalign | | ----------KADFRVTGYTSQPADNSLGLAFNNSEWWDVHQGNVEGFNANGAYGAKFWNQWLSFGQVPGSLIRGDRPTGFLQRAWVGPWQYQISASQNQNAVPHAKIIGGRFTFSPIQSLELGASRIQWGGKGRPEGNQLAGFDFVSFYGANFLGGIEGHHKDAVNWYLEAHDTRTNSRTNYSYTHHIYKDGYYQQGYPLGDAGGDGQLVAGKVELITEDNRWSTRLVYAKVNKAFPHADTLKGIQLGWSGDSVRLNTSLWYTNANNSDS-- |
8 | 4ghbA | 0.08 | 0.07 | 0.88 | 0.89 | CEthreader | | -----TYPTTPFSKIELKEVIESDVTATHTYLYNSAGRLTGYTGKQSFTAGDELFEIENTTTVEYKDHQAVITDEAGTVSTYTLNDKGYATTCTSQDAG--------NTRTYTFSYLINYLENITEKLD----------DGKEYSFITIDYSNRALRIQQKVDTFEHNSTATTPEIANISEIPSLFITDYPLSHAVAIYGKILGEPANYLITQLIPDSESE---ETTTYTYTLDNRG-IVTSCHAVVRHIRNGYEQDYTRTVNYTIE------ |
9 | 4ghbA | 0.10 | 0.08 | 0.87 | 1.02 | MUSTER | | ---TYP-TTPFSKIELKEVIESDAQTATHTYLYNSAGRLTGYTGKQSFIENTTTVEYKDHQAVITD--------EAGTVSTYTLNDKGYATTCTSQDAGN--------TRTYTFSYLINT-EDKYYLENITEKLDDGKEY----SFITIDYSNRALRIQQKVDTFEHNSTATGNEIANISEIPSLFITDYPLSHAVAIYGKILGEPANYLITQLIPDSESEET---TTYTYTLDNRG-IVTSCHAVVRHIRNGYEQDYTRTVNYTIE------ |
10 | 4ghbA | 0.11 | 0.09 | 0.83 | 5.17 | HHsearch | | ------TYPTPFSKIELKEVIESDVTATHTYLYNSAGRLTGYTGKQSGIENTTTVEYKDHQAVITDEA--------GTV-STYTLDKGYATTCTSQDAGN--------TRTYTFSYLIKYLENITEKL-------DDG---KEYSFITIDYSNRALRIQQKVDTFEHNSTPSGNANISEIPSL--FITDPLS-HAVAIYGKILGEPANYLITQLIP--DSE-SEETTTYTYTLDNRG-IVTSCHAVVRHIRNGYEQDYTRTVNYTIE------ |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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