>PF16434 (362 residues) MKTIQYISRISILLIVGSIASSCVKEEVVTPIPALAPEGMPVAINFKDPKPSLADLKYSL YLFSHAKGSSDTYIMEELKNPLQNDSRLKFRNSELREKDYRFLFVATPGTTPEIQVYKNT LNNPPATGDNWEDIRIGILSPKLSLHNYYQVKDISGDELLANDSVRGELSRMVGQMEFRF FKIGNDITNPIPIDLTGIYSIFDRIYKIDITYTGYTTSLSFGEGNILQPETSNNEEFKQE INVALNDRFGIEIPNGQLDTLAGGATAGGKFKGYCFLPANNNVRAVLKIYYYDTTPTCDN LIVPHTANCYEQRQLELRIPAEATAGLPIEANTYTVNSAGIRCNRIIDIHVDHNTNIFTQ WD |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | MKTIQYISRISILLIVGSIASSCVKEEVVTPIPALAPEGMPVAINFKDPKPSLADLKYSLYLFSHAKGSSDTYIMEELKNPLQNDSRLKFRNSELREKDYRFLFVATPGTTPEIQVYKNTLNNPPATGDNWEDIRIGILSPKLSLHNYYQVKDISGDELLANDSVRGELSRMVGQMEFRFFKIGNDITNPIPIDLTGIYSIFDRIYKIDITYTGYTTSLSFGEGNILQPETSNNEEFKQEINVALNDRFGIEIPNGQLDTLAGGATAGGKFKGYCFLPANNNVRAVLKIYYYDTTPTCDNLIVPHTANCYEQRQLELRIPAEATAGLPIEANTYTVNSAGIRCNRIIDIHVDHNTNIFTQWD | |||||||||||||||||||
1 | 4gpvA | 0.06 | 0.04 | 0.78 | 0.77 | DisCoVER | ----------------------GNN-----VPG-EQ-AVLTIKLKGDGDTEDAV-INNYLVFLFREGGAL--DCAPYEGSSN----AAATITTGTTAAKKAYVVANTGALAGGL-FATV---------KTETLLAVTGSLDTQTTNLWSGESEVKFNGG-TNAQVTVSLSFVAAKIQLIVK---------DNR----KNTGGTITITDDAAVLLFAGKKGRFEKVTQNEFYTGFNQYTGAFDS-----GVTTSLSDAVSDF--TINASTVFNHFYTFGNDGTQPTILAIKSTKTVGGTS-SPIF---------YPILFTNTDARHTIEPGKSYTVTLNGDVAAGGGGGTTDPEPVVAAQWV- | |||||||||||||
2 | 4pkcA | 0.10 | 0.06 | 0.63 | 0.67 | DEthreader | WKHASAG--------------------------------FIVGYHAMFPLADSASGYNSIVPPYET-----LEDGLRMIACAV--WAQCIPCDAMQ----TFLICHA---IERYAS-------DAVEEMERLKIEHGA---GKSRAYNDLFILTVGCDMDAIEAATAEPS---------MYASNGNATEAIRKTQKTRSEGQPNGWHNPITTIVANS-----------NF----IITRFY-------------IIGEMRKITNYSGGPVMPTAVGLYME---AADDGGIS----------SKVQK---DLNIDHVQFNVVSTDEMLIVRVSGYS-----------------------YGQ-- | |||||||||||||
3 | 4gpvA | 0.07 | 0.06 | 0.86 | 0.79 | CEthreader | -----------------------------GNNVPGEQAVLTIKLKGDGATDTEDAVINNYLVFLFREGGALDCAPYEGSSNA------AATITTGTTAAKKAYVVANTGALAGGLF-ATVKTETDLLAVTGSLDNTDNASTQTKTNLWSGESEVKFNGGT-NAQVTVSLSFVAAKIQLIVKDNRKNTGGTIT------------ITDDAAVLLFAGKKGRFFGSAAEKVTQNEFYTGFNQYTGAFDSGVTTSTALSDAVSPGDFTINSTVFNHFYTFGNDGTQPTILAIKSTKTVGGTSSPIFYPILFTNTDARHTVTVTLNGDVAAGGGGGTTDPEEPVVSSSIEVTVTAAQWVTQPVD-- | |||||||||||||
4 | 4qdgA | 0.10 | 0.07 | 0.70 | 0.97 | EigenThreader | --------------------------------DLAPCPHGVSLRFIYDYNEYAKVDCLTLLVYDEN----GNYVDTRVTGTELQDENY--RKLDLKQGNYHFVAYGGLACNKSSFLKYTPGEGTGYTDLQ-----VELDSRKNLHGLYWGELTLATADL----YSEGTVEKNTNNIRVVLQQNGEPV----------------DDKKFEFEITDDNILFSYDNNLLENGV--------------------TYTPWAQGQADEGR--EVVVAYAELSTSRLDWYSPKLTVRRK-----------------ADGVEIIIPLINYLLLKSDLYASIFFLSPNLEWIKTYIKIN--DWTVRIN--- | |||||||||||||
5 | 5cagA | 0.10 | 0.07 | 0.69 | 0.78 | HHpred | ------------------GLTGCSRRDILDD--YP-VSGVDIKLDWDGVTDQLP-EGVRVIFYPKNGDGR--KVD--KYLSV-RGGE------KVPPGRYSVVVYNYNT--ESIRIR---------GEESYETIEAYTGNTKVSPDSLYLNDELKIEKSEEVLRLDWKLESVVKKYSFAVE-AK-G---------------LEYVATVVGSIDGLSDCYCIGKGRGVC-SSQ-PIYF------EV------K-------KGDNKV--TAFF-TAFKQVKETAIILILKFIKTD--NT-V-------------QEATIDVTEI-IGTLENKP--------TP--PPEIELPPDDKIEVD-KPE | |||||||||||||
6 | 5cagA | 0.11 | 0.07 | 0.60 | 0.40 | MRFsearch | -------------------LTGCSRRDI---LDDYPVSGVDIKLDWDGVTDQL-PEGVRVIFYPKNG----DGRKVDKYLS--VRGGEKV-----PPGRYSVVVYNYN--TESIRIRG---------EESYETIEAYTGNEKVWSPDSLYVLNIDELKIEEVLRLDWKLESVVKKYSFAVEAK-----------------GLEYVATVVGSIDGLSDCYCIGKGRGV--------CSSQPIYFEVKK-------------------GDNKVTAFFTAFKQGAIILILKFIKTDN----------------TVQEATIDVTEIIG-------------------------------------- | |||||||||||||
7 | 5cagA | 0.11 | 0.07 | 0.65 | 0.78 | FFAS-3D | -------------------LTGCSRRDILDDYP---VSGVDIKLDWDGVTDQLPE-GVRVIFYPKNGDGRKVDKYLSVRGGEK-----------VPPGRYSVVVYNYNTESIRIR-----------GEESYETIEAYTGNCNGLGIEVLNIDELKIEKSEEVLRLDWKLESVVKKYSFAVE-----------------AKGLEYVATVVGSIDGLSDCYCIGKGRGVCSSQ------PIYFEVKKGDN---------------------KVTAFFTAFEKGAIILILKFIKTDNT----------------VQEATIDVTEENKPTPPPE----------------IELPPDDKIEVD---- | |||||||||||||
8 | 4gpvA | 0.11 | 0.09 | 0.80 | 0.83 | SPARKS-K | -------------------------------GNNVPGEQAVLTIKLKGDGATDTENNYLVFLFREG----GALDCAPYEGSSNA----AATITTGTTAAKKAYVVANTGA------LAGGLFATVKTETDLLAVTGSLDNASTQTKTNLWSGESEVKNGGTNAQVTVSLSFVAAKIQLIVKDNRKNTGGT----------ITITDDAAVLLFA--GKKGRFFGSAAEKVTQNEFYTGFNQYTGAFDSGV-TTSDAVSPGDFTINAGSTVFNHFYTFGNDGTTQPTILAIKSTKTVG-----------GTSSPIFYPILFTNTD-ARHTIEPGKSYTVTGGGGTTD-PEEPVVSEVTVTAQWV | |||||||||||||
9 | 3gf8A | 0.10 | 0.06 | 0.59 | 1.32 | CNFpred | ---------------------------------------LSVKFKYDYFADAFHVDKVELYVFDKN----GKYLFKQAEEGSTGNYLMEV---ELPVGQYQFMAWAGA--RDSYDITS-----LTPGVSTLTDLKLKLKRLII-ETLWYGEVINVNFDGTVHQTETINLIRDTKIVRFGFQSYT----GSWTLD----------MNDYDYEIIESNGHLGHD------------------NSLLD--DDVLSFRPYYMEQKD-----ATAYVDMNTMRLMEDRKTRLVLTEKAS----------------GKRVFDINLIDY---------------------------------------- | |||||||||||||
10 | 4qdgA | 0.12 | 0.08 | 0.67 | 0.83 | DEthreader | -----------------------------------APCPHGVSLRFIDYANAFAKKVDCLTLLVYD-N-GNYVDTRIVTELQDE-NYRKL--D-LKQGNYHFVAYGG-ACNKSSF-LKYT-PGEG--TGYTDLQVELDCRKNLHGLYWGELT-L---ATADLYSEGTVE--KNTNNIRVVLQQNGEP-----------V--DDKKFEFEITDD---NI-LF------------NNLLENG------------V-TYTPWAQGQ--VVAYAELSTSRL-V-RDWYSPKLTVRRKADG-V----------EIINIPLNLLKYASDSEFLDRESEWSIFF-EWIKTYIKI---------NDWTVR | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |