Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | GTYTIPSEEGGVGKLNISTSIEIKAVRPSDRPIINGCITLNDGASLSIKQVVLDGSNTDGSQAFDFKTAANYDKLIVDDCEIKNYGKGFYYVNVAAQIAEITINNCLISNIECDGGDMFDCRKGYIAALNISNTTVWNS |
1 | 5gkdA2 | 0.18 | 0.17 | 0.94 | 1.33 | DEthreader | | LEYWVS------KILSLDKTLTIRAQEKGSAVIFPQLIEINNKGNLTLDGVYVDAADAAGNTLIRTTRPMRNYRLAIKNSTFENLDYHFFDAGNRSFADYIEVQDSQFKHITG---DLFRLNKENVEYLTIENSNVSDL |
2 | 1qcxA | 0.10 | 0.09 | 0.94 | 1.33 | DEthreader | | ILTFDFTGEKAGLPITVNSNKSIVGQ-GTKGVIKGKGLRVVGAKNVIIQNIAVTDIPYVWGDAITVD--D-SDLVWIDHVTTARIGRQHIVLGT-SADNRVTISYSLIDGHHYW---GVYLDGSND-MVTLKGNYFYNL |
3 | 5gkdA | 0.22 | 0.20 | 0.92 | 1.68 | HHpred | | GEYWVSK------ILSLDKTLTIRAQEK-GSAVIFPLIEINNKGNLTLDGVYVDATNAAGNTLIRTTRQRNY-RLAIKNSTFENLDIHFFDAGNRSFADYIEVQDSQFKHITGDL---FRLNKGNVEYLTIENSNVSDL |
4 | 5gkdA2 | 0.13 | 0.12 | 0.92 | 0.90 | DisCoVER | | AVIFPQRS---TLIEINNKGNLTLDG----VYVDATLIRTTMNYRLAIKNSTFENLDINSYHFFDAGNRSFADYIEVQDSQFKHITGDLFRLNKEYNVEYLTIENSNVSDLQG---AIAKVYRGFGPHVVMNNNIFNE- |
5 | 5gkdA2 | 0.20 | 0.19 | 0.93 | 0.35 | MRFsearch | | GEYWVS------KILSLDKTLTIRAQEK-GSAVIFPLIEINNKGNLTLDGVYVDATNAAGNTLIRTTRLQRNYRLAIKNSTFENLDYHFFDAGNRSFADYIEVQDSQFKHIT---GDLFRLNKENVEYLTIENSNVSDL |
6 | 5gkdA2 | 0.17 | 0.17 | 0.95 | 1.29 | SPARKS-K | | GEYWVSK------ILSLDKTLTIRAQE-KGSAVIFPLIEINNKGNLTLDGVYVDATNAAGNTLIRTTRLPMQRRLAIKNSTFENLDIHFFDAGNRSFADYIEVQDSQFKHITGDLFRLNKETDDLGIYLTIENSNVSDL |
7 | 6kqsA2 | 0.14 | 0.13 | 0.94 | 0.42 | MAPalign | | GSVFE------NQFLHLNQGIYIGAYGNGAKPLIQTAVLLYDCEYLTVENLEISNKGHKNRTGVAGIAKGTLHEIHLSNLYIHDVGNGGIYFTCLARYENVSVRGCHLKRTSR---WGIAVGYSGHHNIYIADNYVEEI |
8 | 3vmvA | 0.14 | 0.14 | 0.96 | 0.36 | CEthreader | | GTITQGNSPQSLIDVKEIKNISIIGV-GTNGEFDGIGIRLSNAHNIIIQNVSIHHVREGEGTAIEVT--DDSKNVWIDHNEFYSEYDGLVDMK--RNAEYITVSWNKFENHWKTMLVGHDNASLAPDKITYHHNYFNNL |
9 | 5gkdA2 | 0.17 | 0.17 | 0.96 | 1.02 | MUSTER | | GEYWVSKI------LSLDKTLTIRAQEKGSAVIFPTLIEINNKGNLTLDGVYVDATNAAGNTLIRTTRLPMQRRLAIKNSTFENLDINFFDAGNRSFADYIEVQDSQFKHITGDLFRLNKETDDNVEYLTIENSNVSDL |
10 | 5gkdA2 | 0.22 | 0.20 | 0.92 | 1.36 | HHsearch | | GEYWVSK------ILSLDKTLTIRAQEK-GSAVIFPLIEINNKGNLTLDGVYVDATNAAGNTLIRTTRLRNY-RLAIKNSTFENLDNHFFDAGNRSFADYIEVQDSQFKHITGDL---FRLNKGNVEYLTIENSNVSDL |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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