Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | | 20 40 60 80 100 120 140 160 180 200 220 240 260
| | | | | | | | | | | | | |
| Seq | WETFVKVFDNYMAYLRLPKPKLGAVGGFEYLVWNNHVVGYSKSSNLLNLDGITQKVEFVPFDKVMQIFGIPFFKQGETIYLAEMIVWDISKTGEIIEIVFNGENKLEMIEEKGRIKLVSKGTVGWKDKFFNAGEEIVSFDLEPGSKLQKVATSEGLIKLILGRLPAASMEIQILPIERWVEASKEKILLLYAKGDNRIIIRPYSPDFEGADWYVYSLTRNLASKLCEQFNLKLEICPLVCLPLNRVSFLVLVEDEDLLNEVVTQLE |
1 | 4hhuA | 0.08 | 0.05 | 0.55 | 0.74 | DisCoVER | | ------------------------GV---------------------------------------------------VIVFEGDALEKALKE---IRQARFAGTVTYTL---SGNRLVIVITGVPEQVRKELAKEAERLKAE--FNINVQYQIGSGVVIVFEGDDLALEKALIAAGTVTYTLSGNRLVIVITGVPEQV------------RKELAKEA------------------ERLKAEFNINVQYQITG-SLEHHHH----- |
2 | 6rc9A | 0.06 | 0.05 | 0.78 | 0.83 | DEthreader | | GLPQQEAFGLKVKNAEKRQ-KWNHH-WDWARDVL-LQTTGF---FNPRRQTVAAPIIVPRTMGDAAQGGLRE------DLQLFPWANRPDLPIGW-QVNWSNKLTD--------------SAFVNENAPNSFSTGGLDPTADASFTNKQRQLRLGSIPVLVN-T-LNLPALLNPLVTYFIGFKISATLITPLAWRHNALAFQVS-KPKKVTQSD-KLDDDLKNLLD-PNQ---------------------V--RTKLRQSF---- |
3 | 1vt4I3 | 0.07 | 0.07 | 0.98 | 0.84 | CEthreader | | GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-----GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG |
4 | 1vt4I3 | 0.08 | 0.06 | 0.81 | 0.67 | EigenThreader | | GG--------------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-----------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG----------------GGGGGGGG---GGGGGGGGGGGGGGGGGGG------GG |
5 | 3p42A | 0.09 | 0.06 | 0.63 | 0.32 | HHpred | | -----------------------------------TIYLPGEQ-QTLSVG------PVENVAQLVTQPQLRD-----RLWWPGALLTDSAATGRPVKLDPVDNSNP-PLVGDYTLYTVQRVTITLLGAVSGAGQLPWL----AGRSVTDYLQDHP-----RLAGADKN-NV-VITPEGETVAPVRH--VEP-PPGSQLWLGF-SAHVLPEKYA--DLNDQIVSVLTQRVPEL---------------------------------- |
6 | 6oycC | 0.15 | 0.12 | 0.80 | 0.57 | MRFsearch | | ---------------------------ISYIYWDGTKLQFLG-KSVCFENPLYTWSSQTNYQSKRISPNLPLLRKGTRYSLSLNAELDL-VSSLFVRIEFYNESVGFELLKKDSIIFIYPEAYTYTISLINAGCSDFTFHY---LKLEEVTNLSDVLNLLLVEKK-----DSVYINKIESISQLQQKVELVSNPNIKINVIAYGTQ-----------GNFAALYYAKKFRITAYINDC-----PNVKHYGLVSENSSLNLVSMILS |
7 | 6vk3B | 0.11 | 0.10 | 0.89 | 0.45 | FFAS-3D | | -KTLNQGVKTIFDKLN-ERCIFYQAGFWIYYCPGIEFVQFNTKTGEIVNRDESLVYRLGKPKANVEEREFELLYDDVGYYISEIIICDVTGAERMVEIQYSGPSTIQWVRETKEAQVTIPEL--CNLELLAKNE-----DQKNASPILCRMPAKS---------KIGSNSIDLITKYEPIFLGSGIYFLRPFNTDERMVTDNAMSNWDEITETYYQKFGNAINKMLSLRLVSVWLAEVVDMKDRFQTTLSLNILNS---------- |
8 | 4a2lA2 | 0.09 | 0.08 | 0.92 | 0.47 | SPARKS-K | | GLNLYNPITQRFTSYTLQGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSLVNENVYAILPEGNLWLGTVRFNP--EQRSFTTIKEKDGTTTLFRDSHKRLWIGGEEGLSVFKQEGL---DIQKASILPVSNVTKLEASNGIIWVGTRECFNE-KDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLSTNRGNPETEKFRNFTESDGLQ-------SNQFNTASYCRTSVGQFGGITTFR-------PELLL- |
9 | 4a08A | 0.10 | 0.09 | 0.83 | 0.87 | CNFpred | | -----------------------EVHNLLIIDQHFEVLHAHQFEYALSLVSCKLGKD-------NTYFIVGTAMVPKQGRIVVFQYSDG-KLQTVAEKEVKG-AVYSMVEFNGKLLASINSTVRLY-EWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLM-----RSVLLLAYKEEIARDPNWMSAVEILDDDNFLGAEN-------AFNLFVCQKHLQEVGLFHLGEFVNVFCVLFGTVGMIGLVTSLSEYNLLLDMQNRLN |
10 | 2vdcA | 0.09 | 0.07 | 0.79 | 0.83 | DEthreader | | PRRVVEKGIEALKAVWGGAGIHQSLSARSIIKHQAQPFRM------LAHGDTVFVRTAPAMVVGGMDRPMRYTITTDLIGGTGM--TNPASGRFVHHDIDQNTQRAIGSPGHQGIKLEVMGDAPTNKNTII----VL-------TAGKLFAGQAGERFARNSGATV--VV---GCEYMT--GG--TAVILGR---VGDNFAAGMT---------------YV-YDLDD-SLPLYINDES------VIFQR---RFAAEIREVTKFW |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|