Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80
| | | | |
| Seq | LFLVAFQVFPVLYTASTAFTNFGDGHRGSKQDAIVAIQTASVKQVPGSAEYALTVATKGDPATGPLVFLVTDPATGTVSVGDAD |
1 | 2r6gF | 0.22 | 0.20 | 0.92 | 2.13 | HHpred | | AGMGLFVLFPLVCTIAIAFTNYSSTNQLTFERAQEVLLDRSWQA---GKTYNFGLYPAG----DEWQLALSDGETGKNYLSDAF |
2 | 2r6gF2 | 0.20 | 0.17 | 0.83 | 1.50 | MRFsearch | | -GMGLFVLFPLVCTIAIAFTNYSSTNQLTFERAQEVLLDRSWQAGGTQPLYTLDG-----------DGTLTNNQSGVKYRPN-- |
3 | 2r6gF2 | 0.21 | 0.18 | 0.87 | 1.31 | SPARKS-K | | AGMGLFVLFPLVCTIAIAFTNYSSTNQLTFERAQEVLLDRSWQAGGTQPLY-----TLDGDGT------LTNNQSGVKYRPNNQ |
4 | 2r6gF | 0.24 | 0.21 | 0.90 | 1.10 | FFAS-3D | | AGMGLFVLFPLVCTIAIAFTNYSSTNQLTFERAQEVLLDRSW---QAGKTYNFGLYPAGD----EWQLALSDGETGKNYLSDA- |
5 | 2r6gF2 | 0.23 | 0.20 | 0.87 | 1.78 | HHpred | | AGMGLFVLFPLVCTIAIAFTNYSSTNQLTFERAQEVLLDRSWQAGGTQPLYTL----DGD---G----TLTNNQSGVKYRPNNQ |
6 | 2r6gF | 0.21 | 0.19 | 0.90 | 1.47 | MRFsearch | | -GMGLFVLFPLVCTIAIAFTNYSSTNQLTFERAQEVLLDRSWQA---GKTYNFGLYPA----GDEWQLALSDGETGKNYLSDAF |
7 | 2r6gF | 0.23 | 0.21 | 0.92 | 1.21 | SPARKS-K | | AGMGLFVLFPLVCTIAIAFTNYSSTNQLTFERAQEVLLDRSWQA---GKTYNFGLYPAGD----EWQLALSDGETGKNYLSDAF |
8 | 6h3iA | 0.06 | 0.06 | 0.93 | 1.00 | DEthreader | | FNT-NYTSNNPNQMWQRNTIVPQSFTQVSNSEN-TYGQFRMSNFD--N-NLLTEVKG-MEYSLRNNETLVRYLDYDNNQLAAGQ |
9 | 6rflA3 | 0.03 | 0.02 | 0.87 | 1.00 | DEthreader | | NLTNLNIREIEEHMRQTLIDDPNNLLKMAGYKVN-PTELMYYSLQYYFMLARQIETRTTLRIASFTALSS----------GFTY |
10 | 5l8sA6 | 0.10 | 0.05 | 0.49 | 0.62 | DisCoVER | | ---------YF--SH-----------------------------LSADGKCVYYETSKE--NPSFLNTRIRNLETGEDRLLNV- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|