>PF16272 (354 residues) LDLTYSGEKLIGKTVSFQTEDSKKGTLTLNDIIPGEKETSFRINLSEQEDNYTFSGETVS GAGATVKYAGSITPKTMKLDLNVTMPQNQWIKTYQMSELTRGRGKDVIRNQTTGEYEWGE SDNQILTAALYTDMDLEMVKEAGSLYATVSVIIKGMGGYLLPQLLKSVTLESDGNITAEY TSDELQLGEQKFSEIDMDNPASQQQVINFIMMKLMFNTLSADDITAATQGRNYADSPRGL AFWYLKNDLLYVKLNLPSIISLAMQGQGQTVDAHLIAGIADAILKSNPFLLKTLLGVVSE SLDNSLLSMIANMDHQSFQMFFSWIKEGIPMQIEKENGHTHIYLNREALSPLIA |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | LDLTYSGEKLIGKTVSFQTEDSKKGTLTLNDIIPGEKETSFRINLSEQEDNYTFSGETVSGAGATVKYAGSITPKTMKLDLNVTMPQNQWIKTYQMSELTRGRGKDVIRNQTTGEYEWGESDNQILTAALYTDMDLEMVKEAGSLYATVSVIIKGMGGYLLPQLLKSVTLESDGNITAEYTSDELQLGEQKFSEIDMDNPASQQQVINFIMMKLMFNTLSADDITAATQGRNYADSPRGLAFWYLKNDLLYVKLNLPSIISLAMQGQGQTVDAHLIAGIADAILKSNPFLLKTLLGVVSESLDNSLLSMIANMDHQSFQMFFSWIKEGIPMQIEKENGHTHIYLNREALSPLIA | |||||||||||||||||||
1 | 4m8rA | 0.05 | 0.04 | 0.76 | 0.62 | DisCoVER | AGVANQTV-KPGDIVHIYFQEGDQVDFDFRWDLPEGYLGPVGAEIVERHSNGSIRP----YRKPESRVEIFLASERSLGKVLLADGQTPKDFRLYGIFRSVVTYGLCGLAEEVQQPFFLDFCEWKALSNTLALV----------IGS-GN-------------DIAAIQQR-GKGYSLYN-----------VSAGLEQSNYATK-TRS-----------------------NFPPEPQFELPPEQF-GDYPGVGFDAIIPFYFGALPDSLYQKKVGY-IY--YSSNRG--SS--FRLLEPDKESSKLQLQEPFAQ-LSD-KK--VVSITNRTVLFSDPYNSVVWA--------- | |||||||||||||
2 | 3ldkA | 0.07 | 0.05 | 0.66 | 0.67 | DEthreader | IGPCAH---FLHDGDGIQPGG-KNDPAVFVLPIHWSYSETQSLAVARDGGRRFDKLPIADHVVFRAPFV----------WYVAVQFGEWWQE------N-S--DEGGRWGFGSGLP----------SSIHDMLWAAGESPSMA--G---F--L---DW--GFS-AYAAAGKVRYVSFVWLTGDQYEQADG---------------------------------FPT--QGWTGSLLLPRE--------------L--KVQTVSWVVGESNQTATLRT-GIT--RKLTAQLEFSGIYYQFSNES-LRLFDVETLDLTVVVEVYANGR-FA--------------LST-WARS--T | |||||||||||||
3 | 1vt4I | 0.07 | 0.07 | 1.00 | 0.75 | CEthreader | GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG | |||||||||||||
4 | 6w0pA | 0.07 | 0.06 | 0.92 | 0.68 | EigenThreader | IRIIHEDEELDLDFKRILDLRSGLYQRTFTWLTNQ--AKIIIISRLLDCENAYQMISFESDTNQTLTSVMRTNLKEYVTNIIDKNGNQSDILIDGMIQAYHGFDPTNTIGAKGLTGEAYSGHAYC-----------LPFYLYSNQEAAKDLIMFRYNTLEEAKARAKEL----DSIGACFPVATGKEACNLWQHASTQFQPSTGVFYAIYHYMKIYNDHKFMQNYGIEMLVEISKFLLSRGQYNQDKTKFSFYGVMGPDEF----KLMVNHNTYTNFMAKKCFQYLDKILAPSIHSIIASKIGLEKDANNFFGIHMTSIAAAWMNIVYGFGGKITFKNHLLTVKVD-------K | |||||||||||||
5 | 3rwxA | 0.13 | 0.06 | 0.50 | 0.46 | HHpred | ------TDYVGESVATIVPNEDGTINVTYDSGS-G--EF-LNIV------TSTFEGSGQVEAGADFTLTGSIDEQQLTL-VNVPSV-GGLTIEFIQGTLPIS-------YHVSGTYN-EA-NLSVSVGST--TYPDI--------------------------TDCVSIRSSDDTVELTL-GLSNLNSQT--------------------G-RANLGDFTVTDV-VTSTDNSIFIEGSNNLSGTVSNSETNITFTF-------------------------------------------------------------------------------------------------- | |||||||||||||
6 | 3rwxA | 0.17 | 0.08 | 0.46 | 0.38 | MRFsearch | -----------ESVATIVPNEDGTINVTYDS---GSGEFLNNI------VTSTFEGSGQVEAGADFTLTGSIDEQQLTLTIEFIQISYHVSGTYNEANLSVSITDCVSIRSSDDTVELTLGTGRANLGDFTVTDVVT---------------------------------STDNSIFIEGSINTT---------------------------------------------------ITGTLSGTVSNSETNITFTF----------------------------------------------------------------------PGAPIDITAFG----------------- | |||||||||||||
7 | 1bp1A | 0.09 | 0.08 | 0.85 | 0.71 | FFAS-3D | -DYSDSFKIKHLGKGHYSF-----YSMDIREFQLPSSQISMGLKFSISNANIKISGKWKAQ-KRFLKMSGNFDLEGMSISADLKLGSNPTSGKPTITCSSCSSHINSV------HVHISKSKVGWLIQLFHKKIESALRNK---MNSQVCEKVTNSVSSKLQPYFQTLMTKIDSVAGINYGENHHNPPPFAPPVMEFPAAHDRDYFFNTAGLVYQEAGVLKMTLRDDMIPKESSTPPHLSMEVSAESNRLVGELKLDRLLLELKHSNIGPFPVELLQDIMNYI-------VPILV----------------------LPRVNEKLQKGFPLVLQPHQNFLLFGAD--------- | |||||||||||||
8 | 4iiqC | 0.08 | 0.06 | 0.82 | 0.64 | SPARKS-K | IQVYSRHPPEDGKPNYL--------NCYVYGFHPPQ----IEIDLLKNG-----EKIKSEQSDLSFS-----KDWSFYLLSHAEFTPNS-KDQYSCRVKHV-------TLEQPRIVKW---DRRTHSLRYFRLGISEPGYGIPEF---------------------ISAGYVDSHPITMYNSVSQLEPRALWMEENLAPDHWERYTQLLRGWQQAFKVELKQLQHHYNHSGFH--TYQRMIGCELLEDFLQYAYDGQDFLIFNKDTLSWMAMDNVADIIRRVWEAN-RHELQYQKNWLEEE--------CIAWLKRFLEYGKDALQRTEPPKVRVNHKTLYCRAYGFYPPEISI | |||||||||||||
9 | 4ufcA | 0.10 | 0.09 | 0.91 | 0.68 | CNFpred | RDLNLE---NATTTTRYQVD---DVTYTRTTFASFTNVIIMHIKASK-ANALNFTIAYNC----PLVHKVNVQNDQLTVTCQGKEGLKAALRAECQIQVKT---NGTLRPA-GNTLQINEG--TEATLYISAATNYVNYQDVSDESHRTSEYLKRAMQIPYEKALKNHYKKQFDRVRLTLPASQLETPKRIENFGNGEDMAMAALLFHYGRYLLISSS--------------PGGQPANLQGIWNN-SKYTININTEMNYWPAEVTNLSETHSPLFSMLKDLSVT-GAWLAQHIWQHYLFTGNKEFLKEYYPILKGTAQFYMDFLVEWLVVSPSVSPEHGPITAGCTMDNQIAF | |||||||||||||
10 | 6cinA | 0.08 | 0.06 | 0.75 | 0.67 | DEthreader | ATIYPITPSSPMAEIAKNIF-LPCVFHVA---SIF---VVMLAAHTLKA-RVPFVHFFDGFRTSHE------FRA------RTLGSKEFVYDSKKSG---------PSYVGLNSTWMSRLPAD-------VSRINVIYILNMNAAVRA--A--------------LRINLG-----FGTTKHAAIRPYRIQVS-CADVCPAKVKALTMV-P--LEEVTAVEANYNFAEQLQPLLEFS--GA-C------AGCGENATGCSSSNAFGYGMIWADIGYEVYSSKATQTGATKKKDLGLMAMSYGYVY--VA-SVAMGASIAYAP-CINHGIN--------------MTYSQREAKV | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |