>PF16223 (268 residues) NEKLASQPLLTQMNSPNSSTPICQYHFDATQEDYDLWNNEHPDYFPMKIFPIISGQKFSL KVDPILENEYGNIDYIARSKAGLNSTNDIGDFSIPNKGIIAFEMELKIPTVAVGNSSYIS NIDFTGVTNNGYTVRSNYGFHTGTYDPDFGENPPTLNYSLAYRVSDNSGPDHPYFKSQNM TNNMNGYQRLGIYINQNTKQVGFILNGVDQGYQSNLPAPLANIRFSIMNGIAIYSEQLFG QELSSELITDRNALQFSYPQGTTDMCGN |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | NEKLASQPLLTQMNSPNSSTPICQYHFDATQEDYDLWNNEHPDYFPMKIFPIISGQKFSLKVDPILENEYGNIDYIARSKAGLNSTNDIGDFSIPNKGIIAFEMELKIPTVAVGNSSYISNIDFTGVTNNGYTVRSNYGFHTGTYDPDFGENPPTLNYSLAYRVSDNSGPDHPYFKSQNMTNNMNGYQRLGIYINQNTKQVGFILNGVDQGYQSNLPAPLANIRFSIMNGIAIYSEQLFGQELSSELITDRNALQFSYPQGTTDMCGN | |||||||||||||||||||
1 | 5zu5A2 | 0.08 | 0.07 | 0.88 | 1.02 | EigenThreader | AAVYPCETS---VKCDTRSGLPATPVAGNAPSENFDMTHFDHDKNGKPHPEIDDGGLVFKSYVKGVRTTKYARTELREMMSISTKGVNKNNWVFSSAPALEATLKIDHATTTGNANEVGRFIIGQIHDQNDEPIRLYYRK---------LPNQPTGAVYFAHESQD----ATKEDFDMTAEVGEDGIASYRIDVKG--NTMTVTLMDDVVQVVDSNSGYDMYFKAGVYNQNISGDL---DDYSQATFYQLDVSHDQYK---------- | |||||||||||||
2 | 3u75A | 0.12 | 0.06 | 0.51 | 1.22 | CNFpred | -------------------------------------------------------------------------------------------------GLFDFNITFKVLNLNVSPGKTHFDILINSQELNSSVDSIKIGFDSS-----------QSSFYIDRHIPNVEFPRKQFFTDLAAYLE-LRVFSLYGIVDKN--IIELYFNDGTVAMTNTFFMGKYPHDIQIVTDTE-------EPLFELESVIIRELNK------------- | |||||||||||||
3 | 6aiiA | 0.09 | 0.07 | 0.81 | 1.00 | DEthreader | ------------GNG--KQWKLQAMSDFFANEETKNFWSWDPTQWRHENVSVSN--GHMNIVASRNGNTPATQMGCVVSK----------GHVQ---YPVFVEARVKIADA------VFANNVWMISD--DDYEEIDICENYGLGRTGTMNAWAKHIHLSHHVFNNRHLFDDYQPRTWYYEDWAGEYSTIGVYWKD-PNHLEYYINGKWVRTLVLDKGLTKPMKLIINIEAYPTEYGRPEDIMKVDWIRVY------------TPEVV | |||||||||||||
4 | 3u14A | 0.12 | 0.06 | 0.51 | 1.21 | CNFpred | -------------------------------------------------------------------------------------------------GLFDFNITFKVLNLNVSPGKTHFDILINSQELNSSVDSIKIGFDSS-----------QSSFYIDRHIPNVEFPRKQFFTDLAAYLE-LRVFSLYGIVDKN--IIELYFNDGTVAMTNTFFMGKYPHDIQIVTDTE-------EPLFELESVIIRELNK------------- | |||||||||||||
5 | 5ji7A | 0.10 | 0.07 | 0.69 | 0.68 | DisCoVER | ---------RLKRLYPAVEQETPLPRSWSPK-D---K--------FSYIGL-SQNNLRVH-YKGHG--KTPKDAASVRA----------THPIPAACGIYYFEVKIVSKGR------DGYMGIGLSAQPGWDKHSYGYHGD---------------DGHSFCSSG-----TGQPY--G-PTF--TTGDVIGCCVNLINNTCFYTKNGHSLGIAFTDL-PPNLYPTVG-LQT-P----GE--VVDANFG-Q---HPF-VF-DIEDM--- | |||||||||||||
6 | 1upsA | 0.08 | 0.06 | 0.77 | 1.00 | DEthreader | --------------AKDFPANPIEKLDFS------TLDREKW-TDYYLP--------GSLVEYITEDPTVRSSAIMSFDK-IRNEWR-GYTTKY-----GYFEIRAKLSNT-GG--GGHQAWWMVGMQDDKQTGEIDLETFFSKK--------DTWRIAA-YGWNDPNFQTSWTISEDKVPSGDSEYHIYAMEWTP--TALKFYYD-NELFKVIYGSPD-YEMGTILNIYTDHNDVWPKEWAIDYMRVWKPVDGYK--DG-------- | |||||||||||||
7 | 5ji7A | 0.10 | 0.07 | 0.74 | 0.75 | CEthreader | --------------------------LQRRLKRLYPAVDEQETPLPRSWSPKDKFSYIGLSQNNLR------VHYKGHGKTPKDAASVRATHPIPACGIYYFEVKIVSK-------GRDGYMGIGLSAQG----------VNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTT-------GDVIGCCVNLINNTCFYTKNGHSLGIAFTDLPPNLYPTVGLQTPGE-----------VVDANFGQHPFVFDIEDYMREW--- | |||||||||||||
8 | 3im0A | 0.11 | 0.07 | 0.69 | 0.93 | EigenThreader | -------------------------------------------------------NVISTLDLLTKGGGSWNVDGVNMKKSANPGVGGFSFSAVLNKNAITFAWEVFYPKGFDF--ARGGKHGGTFIGHSKTGASNRIMWQ----------EKGGVIDYIYPPSDLKQKPEGHGIGFFDFALKYDVWNRIEIGTKMNTDGESYVIVNGKKEINWSRSPDLLISRFDWNTFFGGPLPSPKNQFTNFQMKKYE----------------- | |||||||||||||
9 | 4xw3A | 0.14 | 0.09 | 0.62 | 0.35 | HHpred | -----------------------------------QMNPYD-----RGSAFAIGGLCCQS--REV-----------------KEWHGCRATKGLM-KGKHYYEVSCHDQ-------G-LCR---VGWSTMQASL-------------DLGTDKFGFGF----GG-TGK-KSHN-KQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPMKQALFPACVLK---------NAE--LKFNFGEEEFKFPPKDGFVALSKA | |||||||||||||
10 | 5ji7A | 0.11 | 0.07 | 0.63 | 0.67 | MRFsearch | ------------------------------QRRLKRLYPAVDEQETPLSYIGLSQNNLRVHYKGHGKTPKDAASVRATH------------PIPAACGIYYFEVKIVSK-------------------GRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDSFCSSGTGQPYGPTFT--------TGDVIGCCVNLINNTCFYTKNGHSLGIAFTDLPPNLYPTVGLQT---------PGEVVDANF--------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |