Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | MSGECAPNVSVSVSTSHTSISGSSSRGGGGYGSGGGGYGSGGGSYGSGGGGSYGSGGGSYGSGGGGGGGSYGSGGHKGGSGMGGGSSGGRVSGGGSSGGSYSSSGGRGSSSGGVKSSGGSSSVKFVSTSYS |
1 | 3bogA | 0.29 | 0.18 | 0.61 | 1.28 | SPARKS-K | | ---------------CKGADGAHGVGCPGTAGAAGSVGGPGCDG-GHGGNGGNGNPGCAGGVGGAGGASGGTGVGGRGGKGGSGTPKGADGAPGAP----------------------------------- |
2 | 1vt4I4 | 0.42 | 0.42 | 1.00 | 1.13 | MUSTER | | GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG |
3 | 2ixqB | 0.09 | 0.08 | 0.87 | 0.70 | DisCoVER | | RVGDLTVAKTRGPVTVQALCARQVALKADTDNF--------EQGKFFLISDNNRDKLYVNIRPMDNAWTTDNGVFYKNDVGSWGGTIGIYVDGQNYTLTLTGGYWAQGFTPS-GT-------TGTTKLTV- |
4 | 1fqtA | 0.09 | 0.07 | 0.79 | 0.69 | CEthreader | | --------------MKFTRVCDRRDVPEGEALKTSVAIFNVDGELFATQDRCTHGDWSLSDGGYLEGDVVECSLHMGKFCVRTGKVKSPPPC--------------EALKIFPIRIEDNDVLVDFEAGYLA |
5 | 2nzaA | 0.08 | 0.08 | 1.00 | 0.60 | EigenThreader | | RYDDVKAITNDPRFGRAEVDLVERVLEPFPIAVVSEVMGVPAADRERVHSWTRQRGLYGWITETVRARAGSEGGDVYSMLGAAVGRGEVGETEAVGLAGPLQIGGEAVTHNVGQMLYLLLTRIALVYVSYL |
6 | 2pffA3 | 0.49 | 0.14 | 0.28 | 0.68 | HHpred | | -----DPLARVSKDQSKDSYGGGGGGGGGGGGGGGGGGGGGG----------------------------------------------------------------------------------------- |
7 | 2pffA1 | 0.50 | 0.42 | 0.85 | 0.88 | MRFsearch | | -----------------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGDKYVLITGA--- |
8 | 6edoA | 0.53 | 0.41 | 0.78 | 0.67 | FFAS-3D | | ------------------TMGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG----------- |
9 | 3boiA | 0.28 | 0.18 | 0.62 | 1.21 | SPARKS-K | | ---------------CKGADGAHGVNGCPGTAGAAGSVGGPGCDGGHGGNGGNGNPGCAGGVGGAGGASGGTGVGGRGGKGGSGTPKGADGAPGAP----------------------------------- |
10 | 3oahA | 0.21 | 0.05 | 0.21 | 0.27 | CNFpred | | -------------------------------------------------------------------------------------------------------ADGVGNASGNWHCDSTWLGDRVITTSTR |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|