>PF16201 (198 residues) LGLAFEALSSNDEEMRRAAGLALVRYKRHMEGRKEFLDRNVWFHFYGGVQNGLGALGKVM DTVCPRLPHVSANFLAKASIVLTTPLAQLYKPIADYILSKETYNLAVVPNFNFMFLSADV DHHGHREFLLGVIADGVKCEEDFDVLDLSGALETLMVFFSCPFATIDTNLRILGVINTIA RIPKCAAMLMDKYAIVAW |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | LGLAFEALSSNDEEMRRAAGLALVRYKRHMEGRKEFLDRNVWFHFYGGVQNGLGALGKVMDTVCPRLPHVSANFLAKASIVLTTPLAQLYKPIADYILSKETYNLAVVPNFNFMFLSADVDHHGHREFLLGVIADGVKCEEDFDVLDLSGALETLMVFFSCPFATIDTNLRILGVINTIARIPKCAAMLMDKYAIVAW | |||||||||||||||||||
1 | 6tnfB | 0.05 | 0.04 | 0.80 | 0.83 | DEthreader | --CDLQILQAPQYDV--MP--QQYAARIPFLALQFLLTILSTLSKLLD-PGS--F------------------------------DLSCCKGLLTLLF-SLHVLYKSPSLLELIESKTAAPTCLLVLGQADKVLEEVIKRGVILQLGTLTVFHELVQTALPAGSCVDLLRSLSKTYAILTSLKYILVKLSGSHLTPQY | |||||||||||||
2 | 2yevA | 0.09 | 0.09 | 0.90 | 1.00 | DEthreader | ---L--LLTTVDHKKIGLMYTATAFFAFALGVFLLILLHGATMLFFIIQAGLGFGNFVVLMGRDVPVNAFSYWAFLGAIVLALSAPGVDYLAIL-LG----VAASVNLSLAGLTA-ATLLVLLER-FF--L--AGL-ANAMGMAWFIVSEVGLFA-LIFQAFFTIVGLHGLHVVIGGFGLITLEAASMYWHLVDA-WL | |||||||||||||
3 | 2z6gA1 | 0.11 | 0.09 | 0.85 | 0.50 | HHpred | IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRPQMVSAIVRTMQNT----------NDV----ETARCTSGTLHNLSH--HREG---LLAIF-----KSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQE--GAKMAVRLAGGLQKMVALLNK--TNVKFLAITTDCLQILAYNQES-KLIILASGGPQ- | |||||||||||||
4 | 4rv1A2 | 0.13 | 0.10 | 0.79 | 0.64 | DisCoVER | VEVLVKLLTSTDSEVQKEAARALANI---A----SGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKE----AARALANI--AS-G--------PDEAIKAIVDAGGVEVLVK-LL-TS--TDSEVQKEAARALANIASPTSAIKAIVDAGGVEVLQKLLTS--TDSEVQKEAQRALENIKSG-GW------------- | |||||||||||||
5 | 2ynsA | 0.13 | 0.12 | 0.90 | 0.27 | MRFsearch | --IFVKLLGSSSDDVREQAVWALGNLLAQLNEHTKLSMLRNATWTLSNFCRALPALARLIHS----NDEEVLTDACWALSYLSDG----TNDKIQAVIEA-----GVCPRLVELLLHPSPSVLIPALRTVGNIVTG--DDAQTQCIIDHQALPCLLSLLTQN-LKKSIKKEACWTISNITAGNKDQIQAVINAGIIG- | |||||||||||||
6 | 4hm9A | 0.11 | 0.10 | 0.91 | 0.81 | SPARKS-K | VALLVQNLERLDEEEADGVHNTLAIVENMAEFRPEMCTEGAQQGLLQWLLKRLKAKMPFDA---------NKLYCSEVLAILLQ-DN---DENRELLGELDG--IDVLLQQLSVFKPSTAEEQEMMENLFDSLCSCLMLSSNRERFLKGEGLQLMNLMLREKKI---SRSSALKVLDHAMIGTDNCHKFVDILGLRTI | |||||||||||||
7 | 6xteA2 | 0.10 | 0.09 | 0.95 | 0.55 | MAPalign | VKLMVPLLKFYHDGVRVAAAESMPLLLECAR-VRGPEYLTQMWHFMCDALIKAIG--TEPDSDVLEIMNDVYILTKVSDILHRPWPDRQWGLCIFDDVASFKYAEYFLRPMLQYVCD---NSPEVRQAAAYGLGVMAQGDNYRPFCTE--ALPLLVRVIQSADSNVNATENCISAVGKIMKKPDCVEEVLP--HWLSW | |||||||||||||
8 | 4rv1A | 0.10 | 0.10 | 0.99 | 0.41 | CEthreader | VEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKATSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASPTSAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIASGPDEAIKAIVDAGGVEV | |||||||||||||
9 | 3opbA | 0.14 | 0.13 | 0.96 | 0.65 | MUSTER | VKIILEYLANKGEPIRILGCRALTRMLIFTNPGLIFKKYS-ALNAIPFLFELLPRSTPVDDNPDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVY----WSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFPQSLRNFNILVKLLQLS--DVESQRAVAAIFANIATTPLIAKELLTKKELIE- | |||||||||||||
10 | 4rxhB | 0.13 | 0.13 | 0.98 | 0.66 | HHsearch | VPIFVELLGSPEPDVREQAVWALGNIAGDSPQCDYVLSCGALRPLLTLLGDSKLSLSNFCRGKTPQPDNTIAPALPVLAKLVYSLDDEVLIDACWAISYLSVIEAGIPRRLVELLMHASTSVQTPALRSVGNIVTG--DDVQTQVIINCGALPCLLSLLSS--NKDGIRKEACWTISNITAGNSAQIQSVIDANIIPP | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |