>PF16161 (200 residues) IQKVTDPAFRKYGQVLEGYDFTSLIKEMKHTPVPEDVIYVPSVEELEALDVMKKLQNKGY GGLPIQIGYCNGHNKKLNAVEYHRNSEINVAVTDLVLLIGHQQDIEPDHTYDTSKIEAFL VPAGTGIEVYATTLHYAPCHVNEGGFQCVVVLPKGTNTELTFPTEKTGEDSLMTAKNKWL IAHEDAKIEGAFNGLKGENI |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 | | | | | | | | | | | |||||||||||||
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Seq | IQKVTDPAFRKYGQVLEGYDFTSLIKEMKHTPVPEDVIYVPSVEELEALDVMKKLQNKGYGGLPIQIGYCNGHNKKLNAVEYHRNSEINVAVTDLVLLIGHQQDIEPDHTYDTSKIEAFLVPAGTGIEVYATTLHYAPCHVNEGGFQCVVVLPKGTNTELTFPTEKTGEDSLMTAKNKWLIAHEDAKIEGAFNGLKGENI | |||||||||||||||||||
1 | 3kt4A | 0.06 | 0.05 | 0.88 | 1.00 | DEthreader | -----GL-EISNWGTIELVNLLAVRKEIETIHFTKVNQSGGLDWLLPLFKLRQILYSYRGKLSKTD-SINTYTKGCHLLTHDDVRISFILYLPWGGGLRLF-PSILPNVPHSDPS-AKLVPQFNQIAFFKVLSFHDVEEVKVDKHRLSIQGWYHI--VRNTSTAQSNVLEDF-------PHKARFTLATK-------VSW | |||||||||||||
2 | 4xc9A | 0.07 | 0.06 | 0.85 | 1.00 | DEthreader | -----QYIFTTGFLVIPGVFGGEVESFRSELERLD-RRYPDLPAASPVFRLALDDLLAPVRLRLLEGYGLRRTKDSVLYLHGGIYVKALVYLSDISFCYVSHAFPLLRERASLFTLSDVFVRSGDVLLLNEALMHGTRRKLTEGDRLLTAFGYGFTEWRELDAE----------GYVDHDVE--------EDFV------ | |||||||||||||
3 | 1yqcA | 0.15 | 0.11 | 0.74 | 2.34 | HHpred | VLPLSQEAFSAYGDVIETQQRDFFH--IN---NGLVERY-HDLALVEILE---------QDRTLISINRAQPAPLTIHELERHPGTQAFIP-KVFVVVVALGDD-----KPDLSTLRAFITNGEQGVNYHRNVWHHPLFAWQRV-TDFLTIDRGGS-DNCDVESI---PEQELCF------------------------- | |||||||||||||
4 | 1yqcA | 0.14 | 0.10 | 0.71 | 1.20 | DisCoVER | VLPLSQEAFSAYGDVIETQQR-DFFHI----------------NNGLVERYHDLAL--VEI-LRTLISINRAQPATIHELERHLGTQAFIPKEVFVVVVALGDDK-----PDLSTLRAFITNGEQGVNYHRNVWHHPLFAWQ-RVTDFLTIDRG-------------------GSDNCDVESI-----------PEQEL- | |||||||||||||
5 | 1yqcA | 0.16 | 0.11 | 0.70 | 1.18 | MRFsearch | -LPLSQEAFSAYGDVIETQQRDFFHIN------NGLVERYHDLALVEILEQ---------DRTLISINRAQPAPLTIHELERHPGTQAFIPKEVFVVVVALGDD-----KPDLSTLRAFITNGEQGVNYHRNVWHHPLFAWQ-RVTDFLTIDRGGS-DNCDVES------------------------------------ | |||||||||||||
6 | 1yqcA | 0.16 | 0.12 | 0.75 | 1.69 | SPARKS-K | VLPLSQEAFSAYGDVIETQQRDF-----FHINNGLVERYHLALVEILEQDRTL-----------ISINRAQPAPLTIHELERHPGTQAFIPGEVFVVVVALG-----DDKPDLSTLRAFITNGEQGVNYHRNVWHHPLFAW-QRVTDFLTIDRGGS-DNCDVESIPEQELCFA--------------------------- | |||||||||||||
7 | 5cadA | 0.10 | 0.07 | 0.76 | 0.82 | MAPalign | --------ESNVPYLFKVVSVIVVKKVYVPEFGSAFGQFQEA------------APHVQLRDLDAAVAFMNINSGGMVLPYYNSSTRVVAVVENARFEMACPHLGAAVVHY---AKVRGNLNVGDVLVIPAGHPIT-FVAVAGSDFRVVGFGIAEHN-------------------KKNFLAGK-----QNIQILSYFVA | |||||||||||||
8 | 3ibmB | 0.08 | 0.06 | 0.73 | 0.52 | CEthreader | ----------EASRVLRERDYRWEGT-------EEEARRQTLVGRPAGQ-----------EAPAFETRYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVLDDR--------------VEPLTPLDCVYIAPHAWHQIHATGANEPLGFLCIVDSDRDRPQRPDADDLARMCADPAVARRIRTEGHHHH------------ | |||||||||||||
9 | 1yqcA | 0.17 | 0.12 | 0.74 | 1.11 | MUSTER | VLPLSQEAFSAYGDVIETQQRDF-------FHINNGVERYHDLALVEILE----------DRTLISINRAQPAPLTIHELERHPGTQAFIPGEVFVVVVALG-----DDKPDLSTLRAFITNGEQGVNYHRNVWHHPLFAW-QRVTDFLTIDRGGSD-NCDVES---PEQELCFA------------------------- | |||||||||||||
10 | 1yqcA | 0.16 | 0.12 | 0.75 | 5.36 | HHsearch | VLPLSQEAFSAYGDVIETQQRDFFH--INN---GLVERY-HDLALVEILE-QDR--------TLISINRAQPAPLTIHELERHPGTQAFIP-KVFVVVVALGD-----DKPDLSTLRAFITNGEQGVNYHRNVWHHPLFAWQRVT-DFLTIDRGGS-DNCDVES--IPEQELCFA------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |