Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | | 20 40 60 80 100 120 140 160 180 200 220
| | | | | | | | | | | |
| Seq | IQDRIPTPEGYERIDVKEDSFAYYLRNLPLKPHGEKVHYYNGKTKTANVYDAVIDMDIGERDLQQCADAVIRLRAEYLYSQERFDEIHFNFTNGFRADYKKWMEGYRIAIDGNNVSWVKRADNLNDYQSFRKYLDMVFSYAGTLSLSQEMVSVPIEEMKIGDVFIQGGSPGHCVIVVDMAENKETGEKLFLLAQSYMPAQDIHLLKNLQNEKISPWYSLNFGDVLKTPEWTFSKDDLKR |
1 | 6istC1 | 0.14 | 0.07 | 0.49 | 0.77 | DisCoVER | | ----------------MVKLVLSYVN----------------------GLVGKG-VDADGWYGTQCMDLTVDVMQRF---F------GW--------------------------------------------R---P--YNAIALVFQRIRTSSTQIKAGDVMIWGAQYGHTGIATEDG-R--ADGTFVSVDQNWLEVGSPAAA---------IHHNM---------DG---VWGVI- |
2 | 2avwD | 0.08 | 0.06 | 0.75 | 0.83 | DEthreader | | ---------YVTSVWTKG----VT-PP-ANFTQG-E-----------D-VFHAPYDITKTNDDLLAGAATAGNMLHWWFDQNKDQI-----------LEEHPEKQKINF------NGEQMFDVKEAIDTKSKLFEYFKEAFLLGVFPDHTSRHEIDLIKLALGLSHTNVRNHVINLWGADFD-SNGNLKAIYVTDSDSNAIGMKKY--------F-VGV--GKVAISIGAQVL--GLFT |
3 | 5fp2A | 0.05 | 0.05 | 1.00 | 0.67 | CEthreader | | SGMLSWQVTPDQVVDFEAGFSRQGNTNRMYRENYAITHNGTWSFGTSRFVAQYDSTRNNRLSASKLENYRLSGELNLPLHALFEQVLTVGAEWNKETLNDPSSSPKSKAEIRALYVEDNIELRPGTMLTPGLRLDDHSDFGLNWSPSLNASQTLGEYFTVKAGIARADAETSVNKELGIEFRRDGWVAGLTYFRNDYKKAVVEGLEGNLLVPLHEDLSWSTNLTYMLQSPEYTLNSTLD |
4 | 4aroA | 0.07 | 0.05 | 0.84 | 0.63 | EigenThreader | | -------APAGFSRH-------------GVRAPTKMTPHQWPEWPVKLGYIT--------PRGEHLISLMGGFYRERFQQQGLLLAIHHQPVKAGICSPYCQQHLPSRLAIGNKVALEG---AVGLASTLAEIFLLEHAQGMPKHNGTPLLQTIAHALGDNKIIAGHNTPPGGALVFERWVDNAGKPYVSVNMVYQTHPAGSVRLNIPGCSDQTGYCPLSTFSRL--------VSHSVE |
5 | 2vpsA1 | 0.10 | 0.07 | 0.74 | 0.48 | HHpred | | -----RASVSFNKP--GHIPFGAVQGYA---PGGVPA-YSNKHDHYFSGERNIEDIFFGFK--YQCVEFARRWLLVRK-------GLLLPDV-NW--ACHIFQLKE-VRATTESFAVLQV--------------------RNG----------TTTKPEADALLVYPSTVGHVGTITEV--G---DDYVCVADQNYRFHYKLKTIIDDDEIIPLGWLTFPGRANRPEPSLHFKEPPK-- |
6 | 4xzzA | 0.10 | 0.05 | 0.49 | 0.43 | MRFsearch | | -------------------------------------------------KAFLITYEDTKEELSMILSSLFQWKEAWARG-----------------DFERYMRFYNPNF-----TRYD----GMKFNAFKEYKKRVFAKN------------EKKNIAFSSINVIPYNKRLFYVVFDQDYKANSQKELYIEIEN----NQVSIIME-------------------------------- |
7 | 2iobB1 | 0.15 | 0.08 | 0.51 | 0.43 | FFAS-3D | | ----------------------------------------------------------------QCVEFARR----FLFLNYGV------VFTDVGMAWEIFSLRFLREVVNDNILPLQAFPNGSP-----------------------------RAPVAGALLIWDKGGGHVAIITQL-----HGNKVRIAEQNVIHSPCYTLKDTFDDTTILGWMIQTEDTEYSLPQ---------- |
8 | 5cqcA | 0.11 | 0.08 | 0.67 | 0.83 | SPARKS-K | | -------------------------------------------SIYPPET----SWEV-NKGMN--SSRLHKLYSLFFDKS-----SAFYLGDTGAYGFQSKKNDQQIFLFSDYVAGYHVDAKSDANDKLDRRLSEISEFCSKA-----------------------TQPATFILPFEMPTDITKGQHQVLLTISYDPKQTPTVYDSIGRDTYSESLSSYFKGKYRTTCDEILTQSIEK |
9 | 5hsgA | 0.07 | 0.05 | 0.68 | 0.73 | CNFpred | | -------------------GIMPAVKEAA--AANIPVIAIDAVLPAG-PQAAQVGVD----NIEGGRIIGQYFVDYVQKEMGGQARLGIVGAL--SAIQNQRQKGFEETLKNPKITIANVVDGQNVQDKAMTAAENLITGN-----------------PDLTAIYATG-EPALLGAIAAVENQGRQKDIKVFGWDLT-GYVTAVLQQDP------------------------------ |
10 | 2avwD | 0.07 | 0.05 | 0.74 | 0.83 | DEthreader | | -V----P---YVTSVW-----TKG-VTPPANFTQ-G-----------EDVFHAPYVADITKTFDLAGAATAGNMLHWWFDQNQIK--------------HPEKQKIN--------FNGEQMFDVKEIDTKSKLFEYFKEFLSLGVFPDHSRHDFIDLIKLALGLSHYVRINHVINLWGADFDS-NGNLKAIYVTDSDSNAIGMKKYF---------VGVN-GKVAISAIGAQV--LGLF |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|