Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100
| | | | | |
| Seq | LIRTSSLPTETEEEWRKRKEMQTLRRMEAKRRRSEKQKNLNLNRGELSLEDERKGLNANRGNWVAPTWSRNVNRGNTLQGLIGQQQGSQGSVESQGGSSSGISEMES |
1 | 4fcgA1 | 0.08 | 0.04 | 0.45 | 0.70 | DisCoVER | | -----------------------------------WQRHYN------------------ADRNRWHSAWRQANELRSV-----PLPQFPLQHTIDAAGLELPLARN- |
2 | 6b434 | 0.06 | 0.06 | 0.89 | 1.00 | DEthreader | | ----ETPL--DFTEYAGAIKTITSALQFGMDALERGLVDTVLAVK-LR---HAP--PVFIFKAHLIEHFDKALMTGKQYVLTMDMLGLETMRRLMESLLHILAPAHV |
3 | 5vc2A | 0.05 | 0.05 | 1.00 | 0.46 | CEthreader | | IGPLMHVIAAKAVGFKENLKPEFKAYAKLVKSNMQVLAKALKEKNHKLVSGGTSNHLLLMDFLDKPYSGKDADIALGNAGITVNKNTIPGETRSPFVTSGIRIGSAA |
4 | 5mqfK | 0.07 | 0.07 | 0.99 | 0.60 | EigenThreader | | TDIMRNEFERLAARAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLREMESNWVSLVSKNYEIERTIVQLENEIYQIKQQHGEANKENIRQDF- |
5 | 6c0fb | 0.20 | 0.08 | 0.43 | 0.25 | HHpred | | -KQYVS-PNVVRAQIKQQAAEEAKSRAEAAVERKIKRRENVLAADP--LS--------------------------------------------------------- |
6 | 6obiA | 0.23 | 0.08 | 0.36 | 0.40 | MRFsearch | | ------RRRKEEEERRMKLEMEAKRKQEEEERKKREDDEKRIQAE-------------------------------------------------------------- |
7 | 5xtcv | 0.24 | 0.07 | 0.31 | 0.46 | FFAS-3D | | ---------EHRDYVMRMKEFERERRLLQRKKRREKKAAELA----------------------------------------------------------------- |
8 | 6ybtu | 0.12 | 0.12 | 1.00 | 1.33 | SPARKS-K | | RLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKERILQEHEQIKKKTVRERLEQIKKTELGAKAFKDIDIEDLEELDPDFIMAKQVEQLEKEKKELQER |
9 | 4f6rC | 0.24 | 0.08 | 0.35 | 0.37 | CNFpred | | --------LEAAEERRKAHFAAMLERLQEKDKHAEEVRKNKELKE-------------------------------------------------------------- |
10 | 5twvB | 0.02 | 0.02 | 0.85 | 1.00 | DEthreader | | SQPSEFLGAYVLAVLLFLALLLQRTFLQASYYVAIETGINLRGAIQTKIYNKIMHMSTSNLWTL-G--------------PGAIIGFCRAFIMTVVT-LVMFDPSVF |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|