>PF16134 (637 residues) LRAWQSEGAARVQDALGRSIVSEDVDEVCIILQELVKATLEGRISVQDSSKFVTDIISIF PKDADSGIDLQDLFLSTVASFEDSNVIPENLPKLLEALSPSPIPTELFALHLEPSTLSAL GLVTSQFPKKAIKVTTSLIYKQRKHNLLREESEGYSKLITEFFTASYSQFPLEVVGRTGE RVKGLVGAFELDPARVLDVLLDTAASTVVSNARFFVRLLKESAWWPKHLSSSSEDEFSNT GKGREELKAEKERKKLIMDAGGNKVAAQLLGFKFRYYQSDDALDNLPENLVVLSALLIKI GFVDLVDLYPHLSPRGDEEMMELRTAWLKKMTDELKMVKPNALAMAGSLHDDTLPNPPRT KLSAPAPTEEKKSEEPKPKEPEKRENWNQKVVLLKHLLALGALPEALFILGKYPFLTGLD KDIADALSRVLIRSIEAVYAPLRPQHADIGIAKVATPLPGGVVEMKTPLKRKQMVTFTVS NLNLRGIDIDYRFFWEDWKDGVPTCRDATDVVILIETLGKLFGLRVGRDPMLMSMVCRIG RSVLENPNCTQEDRDRWINLSRSIIVPAVSFTEGNQGIVNEVWGLINNFPTDTRYSIYGE WISRDKMRIPDLKLKTSITEKRTKDLLKRLSLVTIKP |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 560 580 600 620 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | LRAWQSEGAARVQDALGRSIVSEDVDEVCIILQELVKATLEGRISVQDSSKFVTDIISIFPKDADSGIDLQDLFLSTVASFEDSNVIPENLPKLLEALSPSPIPTELFALHLEPSTLSALGLVTSQFPKKAIKVTTSLIYKQRKHNLLREESEGYSKLITEFFTASYSQFPLEVVGRTGERVKGLVGAFELDPARVLDVLLDTAASTVVSNARFFVRLLKESAWWPKHLSSSSEDEFSNTGKGREELKAEKERKKLIMDAGGNKVAAQLLGFKFRYYQSDDALDNLPENLVVLSALLIKIGFVDLVDLYPHLSPRGDEEMMELRTAWLKKMTDELKMVKPNALAMAGSLHDDTLPNPPRTKLSAPAPTEEKKSEEPKPKEPEKRENWNQKVVLLKHLLALGALPEALFILGKYPFLTGLDKDIADALSRVLIRSIEAVYAPLRPQHADIGIAKVATPLPGGVVEMKTPLKRKQMVTFTVSNLNLRGIDIDYRFFWEDWKDGVPTCRDATDVVILIETLGKLFGLRVGRDPMLMSMVCRIGRSVLENPNCTQEDRDRWINLSRSIIVPAVSFTEGNQGIVNEVWGLINNFPTDTRYSIYGEWISRDKMRIPDLKLKTSITEKRTKDLLKRLSLVTIKP | |||||||||||||||||||
1 | 5dlqB | 0.08 | 0.08 | 0.99 | 1.08 | EigenThreader | VDYVLFQAATAIMEAVVREWVLLEKGSIESLRTFLLTYVLQRPNLQREQILLAVAVIVKRGSLDKSIDCKSIFHEVSQLISSGNPTVQTLACSILTALLSEFSNCKRVFQEEALANQVLSWNFEALLDSRVMELFFTVHRKI-REDSDMAQDSLQCLAQLAS--LHGPIFPDDYLAHFIEGLLNTINGIEIEDGISSIISNLITVFPRNVLTASFVNCLTHLTCSFGRSAALEEVLDKDDMVYMEAYDKLLESWLTLVRKGFFTQHAVQVFNSYIQCHLAAPDGTRNSDQLASVGMLGRIAAEHCMPLLTSLLEERVTRLHGQLQRHEIMEYSIKHSSEVDINTTLQILGSPGEKASSIPGYSRTDLKRWAKTYLLVDEKLYDQISLPLSTAFGGSQWIIGYLLQKVISNLSVWSLANDTVQLLVTLVEPVQRTLMKALVLGGFAHMDLCGIAEATQIDNVAILFNFLMDFLNNCIGLMEVYKNTPETVNLIIEVFVEVAHKQICYLGEACLTLLQVYSKNNLGREEEQYQDLLLIMELLTNLLSKVSAADVVLYGVNLILPLMSQ----DLLKFPTLCNQYYKLITFICEISLMYSLELGMTSMSSEVCQLCLEALTPLALKLVFDMLVLQNTEMT | |||||||||||||
2 | 7apxA | 0.21 | 0.19 | 0.89 | 3.39 | FFAS-3D | IRNWPERSKTLCSDFTALESNDEKEDWLRTLFIELFDFI--------DVASFTNELVNHERQ-VSQASIVGKMFIAVSSTVPNIND--LTTISLCK------LIPSLHEELFKFSWISSKLLNKE-QTTLLRHLLKKSKYELKKYNLLVENSVGYGQLVALLILAYYDPDNFSKVSAYLKEIYHIMGKYSLDSIRTLDVILNVSSQFITEGYKFFIALLRKSDSWPSSHVANNSN-------------------YSSLNEGGNMIAANIISFNLSQYNE-EVDKENYERYMDMCCILLKNGFVNFYSIWDNVKP-EMEFLQEYIQNLETELEEESTKGVEN-----------------------------PLAMAAALSKTQQDILLFGKIKLLERLLIHGCVIPVIHVLKQYPKVLYVSESLSRYLGRVFEYLLNPLYTSMTSSGESKDMAT-ALMITRIDNGILAHKPRLIHKYKTHEPFESLELNSSYVFYYSEWNSNLTPFASVNDLFENSHIYLSIIGPYLGRIPTLLSKISRIGVADIQGSESLHVTIDKWIDYVRKFIFPATSLLQNNPIATSEVYELMKFFPFEKRYFIYNEMMTKLSQDILPLKVSFNKAEREAKSILKALSIDTIAK | |||||||||||||
3 | 7apxA | 0.21 | 0.18 | 0.89 | 3.04 | SPARKS-K | IRNW-PERSKTLCSDFTALESNDEEDWLRTLFIELFDFI--------DVASFTNELVNHERQVSQASIV-GKMFIAVSSTVPNIND-----LTTISLCKLPSLHEELFKFSISS------KLLNKEQTTLLRHLLKKSKYELKKYNLLVENSVGYGQLVALLILAYYDPDNFSKVSAYLKEIYHIMGKYSLDSIRTLDVILNVSSQFITEGYKFFIALLRKSDSWPSSHVANNSN-------------------YSSLNEGGNMIAANIISFNLSQYNEEV-DKENYERYMDMCCILLKNGFVNFYSIWDNVKPE-MEFLQEYIQNLETELEEESTKG-----------------VENPLAMA------------AALSKTQQDILLFGKIKLLERLLIHGCVIPVIHVLKQYPKVLYVSESLSRYLGRVFEYLLNPLYTSMTSSGESKD--MATALMITRIDNGILAHKPRLIHKYKTHEPFESLENSSYVFYYSEWNSNLTPFASVNDLFENSHIYLSIIGPYLGRIPTLLSKISRIGVADIQKSESLHVTIDKWIDYVRKFIFPATSLLQNNPIATSEVYELMKFFPFEKRYFIYNEMMTKLSQDILPLKVSFNKAEREAKSILKALSIDTIAK | |||||||||||||
4 | 7aqoG | 0.23 | 0.20 | 0.88 | 3.05 | CNFpred | IRNWPERSKTLCSDFTALESNDEKEDWLRTLFIELFDFI-----DVASFTNELVNHERQV-----QASIVGKMFIAVSSTVPNIN-----DLTTISLCKIPSLHEELFKFSWI-----SSKLLNKEQTTLLRHLLKKSKYELKKYNLLVENSVGYGQLVALLILAYYDPDNFSKVSAYLKEIYHIMGKYSLDSIRTLDVILNVSSQFITEGYKFFIALLRKSDSWPSSH------------------VANNSNYSSLNE-GGNMIAANIISFNLSQYNEEV-DKENYERYMDMCCILLKNGFVNFYSIWDNVKPE-MEFLQEYIQNLETELEEESTKGVENPLAMAAALS-----KTQQDIL-------------------------FGKIKLLERLLIHGCVIPVIHVLKQYPKVLYVSESLSRYLGRVFEYLLNPLYTSMTSSSKDMATALMITRIDNGILAHKPRL---IHKYKTHEPFESLELNSSYVFYYSEWNSNLTPFASVNDLFENSHIYLSIIGPYLGRIPTLLSKISRIGVADIQKN-SLHVTIDKWIDYVRKFIFPATSLLQNNPIATSEVYELMKFFPFEKRYFIYNEMMTKLSQDILPLKVSFNKAEREAKSILKALSIDTIAK | |||||||||||||
5 | 1vt4I | 0.05 | 0.04 | 0.81 | 0.86 | DisCoVER | IC-SK---------YTDLLRIALFEEAHKQVG--GG---G-GGGG------------------GGGGGG-GG--GG-GGGGGGGGGG--GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG--G--GG--GG--GGGG-GGGGGG-GGG-GG--GGGGGGGGGGGGG-GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-GGG-GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-------------GGGGG--GG-GGGGG------------G---GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG--GGGG---GG-GG-GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG--GG--GGGGGGGGGGGGGGG--GG--GG-GG----GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG--GG--GGGGGG--------GG-GGGGGGGGGGGGGGGGGGG- | |||||||||||||
6 | 3lpzA | 0.12 | 0.05 | 0.48 | 0.69 | CEthreader | ------NKIERIIARLQRRIAEEEQYEAAQETRLVAARYSKQG-NWAAAVDILASVSQTLLRSGGSGGDLAVLLVDTFRQAG-QRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPADPELHHVVGTLYVEEGEFELVLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLL---VANVRAANTAYRIFTSALVEDNKGLTVQNIGSAELRIFPSLPLLNFISMLLLSVQKGSPDLFRQLKSKYEANLNELNGIWDTALELIAEMYFGIQRPRQSNPLLDMMGSLFGGGGAALRRIDTP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
7 | 5oqnA | 0.08 | 0.07 | 0.83 | 1.07 | EigenThreader | EEGIFSRFVDQFIRHVLRGVESPDKNVRFRVLQLLAVIMDNIEIDESLFNLLILSLNKRIYD---REPTVRIQAVFCLTK---FQDEATRTLVASIQNDPSAEVRRAAMLNLYILERARDVNIVNRRLVYSRILKSMG------RKCFDDIEPHIFDQLIEWGLE--DRELSVRNACKRLIAHDWLNALDGDLIELLEKL------DCVKAIEALFQSRSKIKFPESIWKDFTEMLEENFPEASKLSEHLNHYILLRYHHNQSHFDYNTLEFIIEQLSIAAERYDYSDSMLTVVRNMLALTTLSEPLIKIGIRVMKSLSAIEIINDIRDDDIEKQEEKEASSATIVLCLTRSSYMLELVNTPLTEN-----------------ILIASLMDTLITPAVRNTAPNIRELGVKNLGLCCLLDVKLAIDNMYILGMCVSKG-----------------------------------------------------------------NASLKYIALQVIVDIFSVHGNTVVVDSISLHKIFYKVLKN----NGLPECQVIAAEGLCKLFLA---DVFTDDDLFETLVLSYFSPINAFAFCIPVYCFSHPAHQQRMSRTAADILLRLCVLWDDLQSSVIPEV | |||||||||||||
8 | 1vt4I | 0.11 | 0.08 | 0.80 | 0.72 | HHpred | -MDFETGEHQY---QYKDI-----LSVFEDAFVDNFDCVQKSILSKEEI----DHIIMSK--------DAVSGTLRLFWTLLSKEMVKFVEEVLRKFLM----SPIKTEQRQPS-----------MMTRMYIEQRDRLYNDLQPYLKLRQ---AL----LELRPAKNVDSGTVALDVCLYKVQCKMDIFCNSPETVLEMLQKLLYQIDPNHSSNIKLRIHSQAELRRLLKSKPYENCLLVLLNVNAKAWNAFNLSKLLT-TRFKQVTDFLSAATTTHISLDHMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN---PRRLSIIAESIRDGLATWD----------------------------------------------NWKHVNCDKLTIIESSLNVLEPAEYRKMFDRLSVFPSAHIPTILLSLIWFDVVVNK-LHKYSLVEKQ---PKEST---ISIPSNEYALHRSIVDH-YNIPKT---------FD---SDDLIPPYLDQYFYSHIGHHLKNIEHPMVFLDFRFLEQKIRHDSTAW---NASGSILNTL--QQLKFYKPYI--CDNDPKYERLVNAILDFLP-----KIE---ENLICSKYTDLLRIALMAEDEAEEAHKQVQRGGG-- | |||||||||||||
9 | 6gmhQ | 0.14 | 0.11 | 0.74 | 0.90 | MRFsearch | --GVEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQQMYIYRGDKENASQCFEKVLKAYPNNYETMKDDVEAWIELAQILEQT----DIQGALSAYGTATRILQEKVQADVPPEILNNVGALKKYFLASLDRAKAEAISVTTSYNLAREAEKLYKNILRELGAMARDKGNFYEASDWFKEAWSLIGNLHLPGQKKFERILKQPTYSMLALGNVWLQTLHQPT-------------RDREKEKRHQDRALAIYKQVLRNDAKNLYAANGIGAVLAHKG------YFREARDVFAQVREATVWLNLAHIYVEQ-----KQYISAVQMYENCLRKFYKH-----------------------------------------------QNTEVVLYLARALFKCGKLQECKQTLLKARHVAPSDTVLMFNVALVLQRLATSVLKDE--------------------------------------------------------------KSNLKEVLNAVKELEL--------AHRYFSYLSKLALAATEARQCSDLLSQAQYHVARARK---------QDEEERELRAKQEQEKELLRQKLLKEQEEKEKEEQKKLLEQRAQYVEKTKNILMF-------- | |||||||||||||
10 | 7apkB | 0.29 | 0.14 | 0.47 | 2.28 | FFAS-3D | ---------------------------------------------------------------------------------------------------------------------------------------------------LREENEGYAKLIAELGQDLT-------SDLILENIKSLIGCFNLDPNRVLDVILEVFECRP-EHDDFFISLLESYMSMC-----------------------------------EPQTLCHILGFKFKFY---------PSSLYRVAAVLLQFNLIDLDDLYVHLIM-DEHKREIAEAKNQKLGLLEALLKWQHAQNIMDPPYYAAS-----------------------------------------------------------------HKLIALAICKLIHITIEPLYRR-----------------------------------------------------------------VFEDLRRDVFNMFCYLGPHLSHDPILFAKVVRIGKSFMKE--FTEVILSCLLSITDQVLLPSLSLMDCNACMSEELWGMF---KYQHRYRLYGQWKNETYNSHPLLVKVKAQTIDRAKYIMKRLTKENVKP | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |