Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280
| | | | | | | | | | | | | | |
| Seq | ATYHSPGALPAGATYHPSGYAPAGASYHPAGQIPPGASYYPSGGVPHGATYYPQAPVAAVPAGATYLPAGAGLPPGATYYPQAPKSSSGLGLGTGLVAGALGGAILGHVLTPTQTRVVEHAPMSGGYGGGGGGGSNGGGEDKIIIINNGPPGSVTTTDAGSGTTVINAGGAQPAAPAAPAYQPAPAGAPAAAPAAAPAPVPSAPQTPLAPLTPSAAEGAIAATAAGAGLANAAAPAAAAPPPVDPNAPAAAAAPPAPGGIICVPVRVPEPDPKDPTKTIEVEKIACYPAPPPE |
1 | 1k3vA | 0.07 | 0.06 | 0.84 | 0.65 | DisCoVER | | TGTFNNQTEFLVRITAH----ASRLIHLNMPEHEPWSLIDANAWGVWFNDWSNMTEINLVSFEQEIFNVVSLMVALTPAAETLGFYPWLPTKPTQIHLLRTGDEFSTGIYHFDTKPLKLTHSWQTNRSLGAQVGYNTPYMNLTPIV--------PTADTEPNGAIMDYQHGHLTTNPQSKCGRAPLNTYGLTALNNTWDPFVCKNNPPGQLFV------------------------------KIAPIITYSNFWWKGTL-T-FTAKMRNIPTNIGGIRMF---PEYSQLIP- |
2 | 3bicA | 0.07 | 0.05 | 0.66 | 0.67 | DEthreader | | ----------AFTHRG----YDSDNPRVRG--DV---MAGVAIDTVEDTGAVIPV-----------IQNDILKEFRNT---------------------ISISGYHMQEAGADAI-GMN-F--------YMEIAKRAGRLAHCQTSGWLEQPNRTAAMAVFGTLHTNSFDASIAT-IISGIDPWGGSECLNDVAAKLINEGMAKVAGPKLIEAARQARIGSEVIV-GVNKY-QLEKE-------------DNTVRM--DGHDRG----------------------STLAAHL |
3 | 4n2zA | 0.10 | 0.10 | 1.00 | 0.57 | CEthreader | | WQWTSTGPLVGPKNDGRGIAGIKDPTIILINGTHHVFASTAQSAGY-NLVYFTFADWADAPNATFYYLDQAPLGTGYRAAPQVFWFAPHKLWYLVYQNGNAAYSTNPDINNPKGWTAPKVFYPDGMPKIIEQNIGEGYWVDMWVICDSASCHLFSSDDNGQLYRSETMSQPVIAMQDNRNDLFEAACVEAIGTDGHRWFRSWTADSIRGPWQGLANTEQNPWARSNNVQFDGDVWTKSISHGEIIRDGTVDEKLLIDPCNIRFMYQGMDPSAGGEYNALPWRLGFIAHNNPAC |
4 | 2vn4A | 0.08 | 0.07 | 0.94 | 0.55 | EigenThreader | | VGPDGCRAFGTSAGAVIASQRRIEQYITAQVTLQGLSNPSGSLADGSGLGEPRPQRWPIVRNDLNYVAQYWNQTSGGYVDDPNLGCDAGTFQPCSDKALSNLKVVVDSFRSIYGVNKG---IPAGAAVAIGRYAEDVYYNGNPWYVPADGSLAEQFDRNSGT-PLSALHLTWSYASFLTATARRAGIVPPSWANSSASTIPSTCSGASVVGSYSRPTAT--------------SFPPSQTPKPGVPSGTPYTPSTQFGQTVKVAGNAALGNWSTSAAVALEYKYINVGQDGSV |
5 | 5mmmK | 0.15 | 0.03 | 0.22 | 0.30 | HHpred | | ------------------------------------------------------------------------DIWNTTWYPKSAPDVDATDLILGRMASTIAIHIRGK-----NLASYTPSVD---------------MGAFVIVVNADKV--AVSGKK-------------------------------------------------------------------------------------------------------------------------------------- |
6 | 3lmlA1 | 0.12 | 0.05 | 0.40 | 0.70 | MRFsearch | | ---------------------------------------------------------------------------DTIAFPVS--------SSDVALKTSFVSFVKRRDEQ----------------------------GVKIKGVVANYEGIINVRN----GVTLRD----------------------------------------------GTILEPHQVVAWVAGADASASLKSNTFVKYDGAIDATPEEALQNGEFVLTFDA-------RDKAVYVEQDL-------- |
7 | 2xd8A | 0.11 | 0.11 | 0.96 | 0.45 | FFAS-3D | | ----------ANANQVALGRSNLSTGTGYGGATDKYALYLKLKGFQHETIARDLVTKRTLKNGKSLQMTSSFHTPGTPILGNADKAPPVAEKTAEKYDRLIFRSITRGARSASPVSATNFVEPGGTQIRVGSGTNESDAQGRCAVLNPRQYYALIQDIGSNGLVNRDVQGSAL-QSGNGVIEIAGIHIYKSMNIPFLGKYGVKYGGTTGETSPGNLGSHIGPTPENANATGGVNNDYGTNAELGAKSCGLIFQKEAAGVVEAIGPQVQVTSVIYQGDVILGRMA--MGADYPA |
8 | 4k0mC | 0.28 | 0.16 | 0.58 | 0.91 | SPARKS-K | | -------------------------------------------------------------------------------------------------KVYTIDEAARTAKFDETVEVHAKLGSDQNVRGTVSLPHGLGKQVRVLAIAKGEKDYVGGEEIIQAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------------------------- |
9 | 3wfzA | 0.09 | 0.02 | 0.26 | 0.50 | CNFpred | | ----------------------------------------------------------------ATNDY----GKGRGVYISGLPYS-------AANARLLERVLFYASHNE---DKYAAWSSSN--------------PECEVAHFPEQGLYCVINNTDPQKTTVTL----------------------------------------------------------------------------------------------------------------------------- |
10 | 6em8A | 0.05 | 0.03 | 0.68 | 0.67 | DEthreader | | --TER-QRVLHAHLGYT-PRAKKVILSMDARHHNFVGHIGLNEGVA---------------------------------LDLN-I-T--KARA-QVVKALKSNN------T--AKDGTL-----------------------DPVIGRDKEIIGEPGVG--A-GDEPSVDTNFLDKAIDLIEASSKVRLKSHTTPNNLKEQIEKEKAVEFENAALRQTLEYEAKNEWK---QGM--STSLSEDIAIALTKIMFGDDDAMISVIILLQVL----------HLTDVIII----KN |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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