Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| Seq | CLNQQSTQQFIYSLYTDIALTELKGYTMMEFSWMMLRVYGKGNFTQEAELMRNDYEKRTEKTVRLLREVMQRAERIVWRCDPEQYVKGKTYEEVTRLIQGYIENEVDMNYNRECWKTCDDYERTKNEGCFKDKFCARQERCSGHIHNCRYVDSDMTICPSARDSVRRYEFIEYENGVTLGKASNCPRGKTAVDSWWRYLFWHCTYCFCLCDDQYSTKTDRYFNLRETLSNINDNKVVTGLRFTKKNRVFHLQI |
1 | 3d6yA2 | 0.07 | 0.03 | 0.48 | 0.81 | DisCoVER | | ---------QTISLVKKRMKRQMEY-PAL--G--E----------------------------------------VFVLDEE------------E--IRIIQTEAEG------IGPEYSKLKKFIESA------------DGFTNNSYGATFS-------------FQ-------------------------PYTSIDEMTYRHIFTPVLTNKTIPKGRYACIAYNFIPIHYQEEYRVEMKIEIL------- |
2 | 1cf3A | 0.05 | 0.04 | 0.72 | 0.67 | DEthreader | | FGSSVNGLGGSTLVNGGTWT--RPHKAQVDSWETVFG------G--WNWDNVAAYSLQAEGTVHDAEWLLYVTYVAGSAVSTILEYSGIGMLLPVGLNLQD-Q-T-TATVAAWFATETFG----------------------------EKAHE------------------LLNTKLQWAEEVNTTALLIENRDWINHNVAYSDLLPFTRGYVHILFAYDPGVGSMNAA-----LRVIDGSI-------VMFA |
3 | 6v1vA | 0.08 | 0.07 | 0.94 | 0.67 | CEthreader | | VTTRGSEIGKVYNFLIVLTSLQAKAFLTLTACRKLLGLTD--------IDYTQIMNHHIDGQKREFRINILPTLSNNFSNPSYSKNRGSDIDDPIVVLEAAPGYALIGFEILNDPLPILKGYQARLK--------PNYQVDRESMSETIYGDIHKLFCPKQLEQKYYIKDIEFPEGYITKIVFEKRLNQLGYEVTANFIDLNKVKVESSDEYSIIKAETDGIYMPLGVVSETFLTPIYGFGLTVDNAAITLTG |
4 | 3go9A | 0.03 | 0.02 | 0.59 | 0.63 | EigenThreader | | -------------------------------------------------------------------------LVGGLLQAEALQPDPA--------WQQGKL------------DNGFSWQLLAT---------PQRPSDRIELRLIVNTGSLSEPRLALSSASFPPAITSYDFTLYSLSLPLAVSDPIATFDPGQPVTQPVDATLYVVGNVEQAAQDTLSLGFDCRVQY--QRAQCAIHLNTPVENLTANT |
5 | 6v1vA | 0.12 | 0.08 | 0.70 | 0.36 | HHpred | | -TTRGSEIGKVYNFLIVLTSLQAKAFLTLTACRKLLGLTD-IDYTQIMN-------HHIDGQKREFRINIPTLSNNFSN--PSYKNRGSD-------------------------IDDPIVVLEAA---------------PGYAL----IG--FEIL--N--DP-LPILKGY-QARL-KPNYQVDRE--SMSET-IYG----DIHKLFCPK---QLEQKYYI-KDI--EFPEGYVITKIVFEKRLNQLGYEV |
6 | 6v1vA4 | 0.08 | 0.02 | 0.26 | 0.37 | MRFsearch | | --TRGSEIGKVYNFLIVLTSLQAKAFLTLTACRKLLGLT----DIDYTQIMNHHIDGQKREFRINILPTLS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
7 | 6ei6A | 0.10 | 0.08 | 0.81 | 0.59 | FFAS-3D | | CDPTDDICEIGVRMEEQLAK-------QLMMCKNTRDHHKAMGDVAGMNRFEN-LALTVQKDLDLVRYSKRKNEPL-----PKFHYEKRSFNIVHSELEIVVVRGISYNVAN--PKDVDTY-------------------VRVEFPLLNDESFKTKTNVIRDTSSPDYERFKVD----------IQRTNRQFQRIFKRHGVK----FEIYSRGGFLRSDTLIGTVNVKLQETKCEIHDTYDLMDGRKKLEVKI |
8 | 3v0aB | 0.10 | 0.09 | 0.96 | 0.77 | SPARKS-K | | KIYYNFLDQWWTQYYSQYFDLICMAKRSVLAQETLIKRIIQKKMNLTTTNTLRDISNESQIAMNNVDSFLNNAAICVFESNI--------YPKFISFMEQCIINIKTKEKCTNINEDEEFLNIQNMKSLFSSETAEETWPYELVLYAFKEPGNNVIGDASGKNTSIEYSGLVYNSDALYLNGSNQS-ISFSNDFFENGLTNSFSIYFWLRNLGKDTIKSKLIGSKEWEIYFQDTGLVFNMILVSNNSWHYITI |
9 | 5a6bA | 0.08 | 0.02 | 0.26 | 0.51 | CNFpred | | --------AYLFETQAQLNAILSSKVDVGRRIRQAYQADDKESLQQIARQELPELRSQIEDFHALFSHQWLKE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
10 | 3o0yA | 0.04 | 0.03 | 0.67 | 0.67 | DEthreader | | GEGLSPFIVNQINGLIDIPRVMQNDQPIAFEKIEKV-DSLTTEQKQSLITQVIAKVSVVYPAYQSVEKASELLARESGIWYIPTIHQIGLDEV-------LLDINGYITETA----TPSYQV----------------------YTSPPGIY-WINLRDMKANPKFGL--------------------------------------EAGHALYSEQLELRVRVGLRWT--------R--AISMSEQTGVEIEM |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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