>PF16061 (253 residues) CLNQQSTQQFIYSLYTDIALTELKGYTMMEFSWMMLRVYGKGNFTQEAELMRNDYEKRTE KTVRLLREVMQRAERIVWRCDPEQYVKGKTYEEVTRLIQGYIENEVDMNYNRECWKTCDD YERTKNEGCFKDKFCARQERCSGHIHNCRYVDSDMTICPSARDSVRRYEFIEYENGVTLG KASNCPRGKTAVDSWWRYLFWHCTYCFCLCDDQYSTKTDRYFNLRETLSNINDNKVVTGL RFTKKNRVFHLQI |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | CLNQQSTQQFIYSLYTDIALTELKGYTMMEFSWMMLRVYGKGNFTQEAELMRNDYEKRTEKTVRLLREVMQRAERIVWRCDPEQYVKGKTYEEVTRLIQGYIENEVDMNYNRECWKTCDDYERTKNEGCFKDKFCARQERCSGHIHNCRYVDSDMTICPSARDSVRRYEFIEYENGVTLGKASNCPRGKTAVDSWWRYLFWHCTYCFCLCDDQYSTKTDRYFNLRETLSNINDNKVVTGLRFTKKNRVFHLQI | |||||||||||||||||||
1 | 3d6yA2 | 0.07 | 0.03 | 0.48 | 0.81 | DisCoVER | ---------QTISLVKKRMKRQMEY-PAL--G--E----------------------------------------VFVLDEE------------E--IRIIQTEAEG------IGPEYSKLKKFIESA------------DGFTNNSYGATFS-------------FQ-------------------------PYTSIDEMTYRHIFTPVLTNKTIPKGRYACIAYNFIPIHYQEEYRVEMKIEIL------- | |||||||||||||
2 | 1cf3A | 0.05 | 0.04 | 0.72 | 0.67 | DEthreader | FGSSVNGLGGSTLVNGGTWT--RPHKAQVDSWETVFG------G--WNWDNVAAYSLQAEGTVHDAEWLLYVTYVAGSAVSTILEYSGIGMLLPVGLNLQD-Q-T-TATVAAWFATETFG----------------------------EKAHE------------------LLNTKLQWAEEVNTTALLIENRDWINHNVAYSDLLPFTRGYVHILFAYDPGVGSMNAA-----LRVIDGSI-------VMFA | |||||||||||||
3 | 6v1vA | 0.08 | 0.07 | 0.94 | 0.67 | CEthreader | VTTRGSEIGKVYNFLIVLTSLQAKAFLTLTACRKLLGLTD--------IDYTQIMNHHIDGQKREFRINILPTLSNNFSNPSYSKNRGSDIDDPIVVLEAAPGYALIGFEILNDPLPILKGYQARLK--------PNYQVDRESMSETIYGDIHKLFCPKQLEQKYYIKDIEFPEGYITKIVFEKRLNQLGYEVTANFIDLNKVKVESSDEYSIIKAETDGIYMPLGVVSETFLTPIYGFGLTVDNAAITLTG | |||||||||||||
4 | 3go9A | 0.03 | 0.02 | 0.59 | 0.63 | EigenThreader | -------------------------------------------------------------------------LVGGLLQAEALQPDPA--------WQQGKL------------DNGFSWQLLAT---------PQRPSDRIELRLIVNTGSLSEPRLALSSASFPPAITSYDFTLYSLSLPLAVSDPIATFDPGQPVTQPVDATLYVVGNVEQAAQDTLSLGFDCRVQY--QRAQCAIHLNTPVENLTANT | |||||||||||||
5 | 6v1vA | 0.12 | 0.08 | 0.70 | 0.36 | HHpred | -TTRGSEIGKVYNFLIVLTSLQAKAFLTLTACRKLLGLTD-IDYTQIMN-------HHIDGQKREFRINIPTLSNNFSN--PSYKNRGSD-------------------------IDDPIVVLEAA---------------PGYAL----IG--FEIL--N--DP-LPILKGY-QARL-KPNYQVDRE--SMSET-IYG----DIHKLFCPK---QLEQKYYI-KDI--EFPEGYVITKIVFEKRLNQLGYEV | |||||||||||||
6 | 6v1vA4 | 0.08 | 0.02 | 0.26 | 0.37 | MRFsearch | --TRGSEIGKVYNFLIVLTSLQAKAFLTLTACRKLLGLT----DIDYTQIMNHHIDGQKREFRINILPTLS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
7 | 6ei6A | 0.10 | 0.08 | 0.81 | 0.59 | FFAS-3D | CDPTDDICEIGVRMEEQLAK-------QLMMCKNTRDHHKAMGDVAGMNRFEN-LALTVQKDLDLVRYSKRKNEPL-----PKFHYEKRSFNIVHSELEIVVVRGISYNVAN--PKDVDTY-------------------VRVEFPLLNDESFKTKTNVIRDTSSPDYERFKVD----------IQRTNRQFQRIFKRHGVK----FEIYSRGGFLRSDTLIGTVNVKLQETKCEIHDTYDLMDGRKKLEVKI | |||||||||||||
8 | 3v0aB | 0.10 | 0.09 | 0.96 | 0.77 | SPARKS-K | KIYYNFLDQWWTQYYSQYFDLICMAKRSVLAQETLIKRIIQKKMNLTTTNTLRDISNESQIAMNNVDSFLNNAAICVFESNI--------YPKFISFMEQCIINIKTKEKCTNINEDEEFLNIQNMKSLFSSETAEETWPYELVLYAFKEPGNNVIGDASGKNTSIEYSGLVYNSDALYLNGSNQS-ISFSNDFFENGLTNSFSIYFWLRNLGKDTIKSKLIGSKEWEIYFQDTGLVFNMILVSNNSWHYITI | |||||||||||||
9 | 5a6bA | 0.08 | 0.02 | 0.26 | 0.51 | CNFpred | --------AYLFETQAQLNAILSSKVDVGRRIRQAYQADDKESLQQIARQELPELRSQIEDFHALFSHQWLKE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ | |||||||||||||
10 | 3o0yA | 0.04 | 0.03 | 0.67 | 0.67 | DEthreader | GEGLSPFIVNQINGLIDIPRVMQNDQPIAFEKIEKV-DSLTTEQKQSLITQVIAKVSVVYPAYQSVEKASELLARESGIWYIPTIHQIGLDEV-------LLDINGYITETA----TPSYQV----------------------YTSPPGIY-WINLRDMKANPKFGL--------------------------------------EAGHALYSEQLELRVRVGLRWT--------R--AISMSEQTGVEIEM | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |