>PF16003 (475 residues) TKRYCPLCHENVTWLPKFAACPKCGFKPIPYNIEEPYDDKLTADQILQEFTNNKTTDPTI DKPSEASLIGGAEKCRCTCKDGKICAHCRIKKLCEDIFKTPGNAEDDCGKCVSKSSGLYN ICKTSSPDCRPYLTKVFQELKDLYHITKTKNENIIDDHKENVKRSVDKIQEAKHIKKIDE PSSRSKTNEANLEAERKKFMVKNFQQHESCKGKSFDYNKRRQYPGTKIGHKTCLNGFAGR KNVPHNMGWLWNAETNGLRRGWRPGAIRKPIKTLMQHFLINNNMQLCCDLPDNENCDKNK DEEKDYTKEPTLHICKKNGDFYITLRPLKNYESCNNMKPIQFKISKNPLLLKKRELKQYL KELGFAKCICHKPISGCCCRSFLERKKLEYQCCRECLKRQIPNCADTLILSDTTDSETEF DFGVTPPAGILQSKKCSKKRKKVSSATQYEENDWKIKEDQSKPLGKYFKLHNCAV |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | TKRYCPLCHENVTWLPKFAACPKCGFKPIPYNIEEPYDDKLTADQILQEFTNNKTTDPTIDKPSEASLIGGAEKCRCTCKDGKICAHCRIKKLCEDIFKTPGNAEDDCGKCVSKSSGLYNICKTSSPDCRPYLTKVFQELKDLYHITKTKNENIIDDHKENVKRSVDKIQEAKHIKKIDEPSSRSKTNEANLEAERKKFMVKNFQQHESCKGKSFDYNKRRQYPGTKIGHKTCLNGFAGRKNVPHNMGWLWNAETNGLRRGWRPGAIRKPIKTLMQHFLINNNMQLCCDLPDNENCDKNKDEEKDYTKEPTLHICKKNGDFYITLRPLKNYESCNNMKPIQFKISKNPLLLKKRELKQYLKELGFAKCICHKPISGCCCRSFLERKKLEYQCCRECLKRQIPNCADTLILSDTTDSETEFDFGVTPPAGILQSKKCSKKRKKVSSATQYEENDWKIKEDQSKPLGKYFKLHNCAV | |||||||||||||||||||
1 | 4rgkA | 0.07 | 0.04 | 0.57 | 0.78 | DisCoVER | -YQFVEIQVIRNPVPQLHAIIKQRGCCAILGVFP--QEKATWNREIGDYLDRNNFVSKPQIYGIYW----STPQVERQDK--RQAVQIFL-----------------------------------------N-------------------------------------N--------------------------------------LWQTESQHFD--------ANRVV-TY--AD---RTRRRPPKS-----SSLGLSPHVDGGSIERWLDENFRHVYRHVFSGWQKYDPFAAE--------GRPEVREFPSPASFRTFQGWTALT---------PQRTHAGTLN----V---I---------PIANAAYILLRALQDDV--ADD--DLC-GAAPGRALSASQWHLLEAISPI--PDLEAGDTVFW--HC---------DV--IHSVENEH-NGEFDS------NVYIAAA- | |||||||||||||
2 | 4a01A | 0.05 | 0.03 | 0.57 | 0.67 | DEthreader | ------------------------------------VCAVIG-------------IAFALFQW------------------LL--------V---S---------------K---------VKLSHNVVVKCAEIQNAISEGATSFLFTEY-KYVGIFMVAFAILIFFLGSV--PQACSYDKTK------TC-KPALATAIFSTVSFLLGVTSVSLGMKI-TYANARLEARKGVGKA--FITAFRSGAVML----PNPAVIDNVGDNVGDIAGMGSDLFGSYAESS-----CAALVVA----------------------E-LKQLSTMAGLWALIGFTETS--------------CRTGAATN---------NAGG------------------E--M-AGMSHRIRETDAD--GN-TAAIGKGFAIGSAAPYFSTMKGSAAMATCVKISAS-ASNTGGAWNAKKY--A----- | |||||||||||||
3 | 5flmB | 0.07 | 0.07 | 0.98 | 0.69 | CEthreader | YVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSP------IGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMA-----YISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLE | |||||||||||||
4 | 5yfpE | 0.06 | 0.05 | 0.93 | 0.72 | EigenThreader | ELSKDHRNDVLIDANTKNLPTNEKDQDAIREAIWKQLDPAIKKELIRRYNDFDIVEQLRLSKNWKLNLKSVKLMKNLLILSSKIEKYSEMMENELLENFNSAYRENNFTLNNFNGGVNVIQSFINQHDYFIVKRVTHVIRVFAQKIEPRFEVLLRNSLSISFTLFGKFTKSLIDYFQLLEIDDSNQILSTTLEQCFADLFSHNYDKEINKRVLLDKYKEKLSTNTASDIDNSPNSPANYSLEVAYWKICKVDINKTAGVVNLNFLKFISMSTEILDLLSISIKSIFLPLLNNSPEIILQETKFSAILCKQK-------------KKDFVPKSQELLDQDT-------LPAIEIVNIL---------NLIFEQSSKFLKGKNLQTFLTLIGEELYGLLLSHQVNSIIEDWGVASLIDK--FATLRELANLFTVQPELLESLTKEGHLADIGRDIIQSYISNREDFNHDNFINSVK- | |||||||||||||
5 | 3pihA2 | 0.17 | 0.06 | 0.37 | 0.43 | HHpred | GKAHCPECGRPLE-----LMCPVCGIG-FPEITPKLF--S-----------FN-----SPYGACPNCHEVDPS---------LV----------------------A---IIP-----Y------RWDR-RLSRWVAREIEK-RGVSPPEDVKEFILY-------GDFEG---VVPKVQRWHR------------------ETE-MKEW-LEKNF------------IVQRTCSV----------CGGRRLNREALSVKINGLIEFTELSISEELEFLKNL---N----LTEREIVGELLKEIEK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
6 | 3mkrB | 0.15 | 0.06 | 0.42 | 0.92 | MRFsearch | ----------------------------------------ETAMRLLHDQVGV-------------------------------TQFGPYKQLFLQTYARGRTTYPCLPSMYG-------------PAVGLKLNDLIQRLQLCYQLTTVGKFEEAVEKFRSILLSKQEIAEAQQLITI----------CREYIVGLSMETERKKLPK-------------------------------------------------------ETLEQQKRICEMAAYFTH------------------------------------------------------SNLQPVHMIL------VLRTALNLFFKLKNFR-------TAAAFARRLPEVAQQTRKILSACEKNPT--------------DAYQLNYDMHNPFDI--------------------------------------------- | |||||||||||||
7 | 5a9q5 | 0.09 | 0.07 | 0.76 | 0.65 | FFAS-3D | --------SMEFGFLPNPKPLESPFKVHLEKLSLRQREDMKLYQTPLELKLKHSTVH--VDELCPLIVPNVAVIHDYADWAQIVKHWSLTWTLCEALWGHLKELDSQLNEPREYIQILE---------RRRAFSRWLSCTEEVSLKNSPVEAVFSYLTGKRISEACSLAQQSGDHRLALLLSQFVGSQSVRELLTMQLVDWHQLQAFIQDERLRIFALLAGKPVQLSEKQINVCSQLD----------WKRSLAIHLWYLLPPTASISRALSMLLKLYSDRHDLNQLLEPRSITADPLDYRLSWHLWE---------------VLRALNYTHL------------SAQCEGVLQSYAGQLESEGL--WEWAIFVLLHIDNSGIREKAVRELLTRHCQL-----------LETPKETFLTQKLRV--PAKWI-------------------------------------------- | |||||||||||||
8 | 6e5oY | 0.10 | 0.10 | 0.95 | 0.82 | SPARKS-K | LAQLKPVKDSDLGKFGQRALDFYSIHKPLAQIAGNRYASGPVGKALSDACMGTRENLEYPSPPQPHTKQKLDDAKPLLLKGFPSFTINEVKKLIDAVFWSGEKRNTILEGYNYLPNENDHKKRENPKKPAKR--QFGDLLLYLEKKYWGKVFDEAWERIDKKIAGLTSHIEREEARNAEDAQMDEKEFYACEIQLQKWYGDLRGNPFAVEAENRFSIGSDGHSIQY-RNLLAWKYLENGKREFYLLMNYGFTDGTDIKKSGKWQGLLAKVIRQGREFI--WNDLLSLETGLNGRVIEKTIYNKKIGRDEPALFVA-----LTFERREVVDPSNRGENIPAVIALTDPEKQRAIQAAKEVEQRRGYSR----------KFASDDMVRNSARDLFYHAVTHDAV-----LVFANTFMTERQYTEGLTSKTYLSKTL-AQYTSKTCSNCGFTITYADVMLVRLKKTSDGWATTLNNKE | |||||||||||||
9 | 3sqwA | 0.15 | 0.08 | 0.52 | 0.74 | CNFpred | -------------------------------------------QKTIKPILS------EDHDV-----------ARAKTGTGKTFAFPIFQHLINTKFDSQYMV--------------KAVIVA----TRDLALQIEAEVKKIHDMN----------GLKKYACVSLVG--------------------TDFRAAMNKMNKLR-------------PNIVIATPGR----IDVLEKYS--NKFFRFVDYKVLDEDRLLEIGF-----RDDLETISGILNEKN--------------------SKSADNIKTLLFSATNKKECLFLDTVDKNEPEAHRIDQSVVISENSIFAAVEHIKKQIKERDS------NYKAIIFAPTVKFTSFLCSILKNEFKKD-----LPILEFH---------------------------------------------------------------- | |||||||||||||
10 | 4bujB | 0.05 | 0.03 | 0.56 | 0.67 | DEthreader | LDYQIK--LNSFS-WE-IIKNSEIDVLMPLDKKDFEWTDYEDLDNMDAPLI--IKYFKKFPKD--------------------PL-AMILYSWLSSKLS-----DIK-SL----------------E--L-------I--QYYLLTKEYTVYTYVDAPKDEGEKAKAELRSNNWRWFQLWLGASIKKISLCVGEYLECSDLYQGFLLKVIS--NG-QFMYA-NV--N------NNGDDERTVLCALLLERLHHYNALARLIIQFRIGLGNFELSIESYNDFDQTLNQF-------------------------------------DVGE--SDTKE-A--------------------DKHKFNNLKWERLDKNQRRASNGQNKV--M--LYCESK-NL--------------WNVT---------------------------------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |