>PF16001 (445 residues) PKRRSFIERAQRESEELVRTMGGSLELEGGRRTRSSTRGTPTRPAETVTPPPSKKARTSP ATTKSGGRGRGARKLDIAGGEEVEQETAKSKSVIADEQEEPVQASEAVKSNVAAKKGKKE EKVQKAKEADVKETVDTKSKDDSEPKDTESKVTASQATESTDQPDSAAQVPAAQDKKQNN VVHDKSNTKEPEVKEKTPEPLAKPEEPAEPVESPQKSDAAAPDSASAMEVDDEEKQQPIT EQPAADTTSSDTAVITETIDGKNESKVAQEKVSSEEPKVETSEPVKQQTPEPMEVDSSSK ASTETTKTVSPVKEVVPVAAAAAAVESESDQTTVSNNEVVESAIEVKEDAPVVPEKEVNA SEVESTPAENSTTKADEAPANNDVSKLSVPVAQADTVVTETPPTAVKEPQANCENKSEHN DNGEPKIVNNATDDGENHVTPQACN |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | PKRRSFIERAQRESEELVRTMGGSLELEGGRRTRSSTRGTPTRPAETVTPPPSKKARTSPATTKSGGRGRGARKLDIAGGEEVEQETAKSKSVIADEQEEPVQASEAVKSNVAAKKGKKEEKVQKAKEADVKETVDTKSKDDSEPKDTESKVTASQATESTDQPDSAAQVPAAQDKKQNNVVHDKSNTKEPEVKEKTPEPLAKPEEPAEPVESPQKSDAAAPDSASAMEVDDEEKQQPITEQPAADTTSSDTAVITETIDGKNESKVAQEKVSSEEPKVETSEPVKQQTPEPMEVDSSSKASTETTKTVSPVKEVVPVAAAAAAVESESDQTTVSNNEVVESAIEVKEDAPVVPEKEVNASEVESTPAENSTTKADEAPANNDVSKLSVPVAQADTVVTETPPTAVKEPQANCENKSEHNDNGEPKIVNNATDDGENHVTPQACN | |||||||||||||||||||
1 | 5yfpD | 0.07 | 0.07 | 0.95 | 1.81 | SPARKS-K | PINQQLELQEHLLFNNLIEEIHDIMYSKSNKTNFTRVTNNDIFKIISISHNGFTSLENYLYN---------IVNIDIMEHSKTINKNLEQFIHDQSLNKGFNRIGFLLKTLPVAFNIITERAKEEIHNIIVKSTESIRSKHPSLLKMATSLKNDNHFGLPVQDILSIILRECFAIQCHRAIFEMSNIL------------QPTSSAKPAFKIWGKLLDEIELLLVRYINDPELISSNNGSIKPINGEDNSSVKDQAFELKALLKD--IFPGFSVSSNVPPSVDPFLLFTQSTSTIVPSVLTQNTISSLTDDYMNKSFLPKIQMTMDYLFTVEVESNNDFQRLFYNLLNVFNTANTLGLFNSLIGTSDRHLTRKIITAWLQNGILMDQEQKILNGDETLFHQAGKGLSKSDLFNNLTLDTKKAINIDEVSQEPMLDADRLRSSWTF | |||||||||||||
2 | 2nbiA | 0.12 | 0.11 | 0.98 | 1.08 | MUSTER | PSDLNPSSQPSECADVLEECPIDECFLPYSDASRPPSCLSFGRPDCDVLPTPQNI--NCPRCCATECRPDNPM---FTPSPDGSPPICSPTMLPTNQPTPPEPSSAPSDCGEVIEECPLDTCFLPTSDPARPPDCTAVGRPDCDVLPFPNNLGCPACCPFECSPDNPMFTPSPDGSPPNSPTMLPTPQPSTPTVITSPAPSSQPSQCAEVIEQCPIDECFLPYGDSSRPLD---CTDPAVNRPDCDVLPTPQNINCPACCAFECRPDNPMFTPSPDGSPPICSPTMMPSPEPSSQPSDCGEVIEECPIDAPKSDSARPPDCTAVGRPDCNVLPFPNNIGCPCPFECSPDNPMTPSPDGSPPNCSPTMLPSPSPSAVTVPLTPAPSSAPTRQPSSQPTGPQPSSQPSECADVLELCPYDTDSSRPPDCTDPSVNRPDCDKLSTAID | |||||||||||||
3 | 1t3tA2 | 0.07 | 0.04 | 0.67 | 0.67 | DEthreader | HNG-------I--KPKAGLVGFGPLGGAAFNFGRPALTGYF-----MLAGGIGNIRADHVCQEVIDRCWQL----PILFIHDVLNAMPKFELRPGMSLEIWCNESQERYVLA-VAAD-QLPLFDELCKAPYAVIGHDNHFDNQPIDL-LL-K----------------------LSANW-LAVKAVGEELCPQLGL---LSLVISAFATLTPQAGDPGLNV----------------------PYIATGARPKVAVAFHRAGFD------------SDLLGG-----------------VACGGFSYGKSILRDEFETF-FHRP-----------LA-LGVNGCQM----MSNLRELIPGSELWPR-FVRNH------------AVSH--G-EGRVEVY-ETYPANSPNGITAMMPHPERVFRTVA-------N--SWH-ED--- | |||||||||||||
4 | 4o9xA | 0.07 | 0.07 | 0.99 | 0.54 | CEthreader | PREYLGQQKTAYTDGQNTTPLQTPTRQALIAFTETTVFNQSTLSAFNGSIPSDKLSTTLEQAGYQQTNYLFPRTGEDKVWVAHHGYTDYGTAAQFWRPQKQSNTQLTGKITLIWDANYCVVVQTRDAAGLTTSAKYDWRFLTPVQLTDINDNQHLITLDALGRPITLRFWGTENGKMTGYSSPEKASFSPPSDVNAAIELKKPLPVAQCQVYAPESWMPPRLPPHSLTLTTDRYDHDPEQQIRQQVVFSDGFGRLLQAAARHEAGMARQRNEDGSLIINVQHTENRWAVTGRTEYDNKGQPIRTYQPYFLNDWRYVSNDSARQEKEAYADTHVYDPIGR---EIKVITAKGWFRRTLFTPWFTVNEDENDTAAEVDPKLYQKTPTVSVYDNRGLIIRNIDFHRTTANGDPDTRITRHQYDIHGHLNQSIDPRLYEAKQTNNTIKP | |||||||||||||
5 | 6gmhQ | 0.06 | 0.06 | 0.92 | 0.80 | EigenThreader | GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG---------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-----------------------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGVEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFA----SSSFVLPFFGLGQMYIYRGDKENASQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELAQILEQTDIQGYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYFLASLDRAKAEAEHD | |||||||||||||
6 | 1ub1A | 0.30 | 0.04 | 0.14 | 0.30 | HHpred | --------RSKVELIAYFEKVGDSLDPNDFDFT-VTGRGSPSRRE----QRPPKKAKSPKSPGSGRGRGRP-KGS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
7 | 6egcA | 0.21 | 0.06 | 0.27 | 0.48 | MRFsearch | --IIRELERSLREQEELAKRLKELLRE--------------------------------------------LERLQRESSDEDVRELLREIKELVEEIEK--LAREQKYLVEELKRQGNEIIRELERSLREQEELA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KRLKELLRELERLQREG----SSDEDVRELLREIKELV----------------------------------------------------------------------------------------------- | |||||||||||||
8 | 3cnfB | 0.08 | 0.07 | 0.95 | 0.52 | FFAS-3D | PRAIPYTNQRGTVTNEFFRTIVATLANDDMQKATRSCTKQWLRHTDHLSVVYATMSNFMLNFTNNFATHVAVVLYQSGVINGPASTYLRENEVLVVMPDYYDVVSRFANANLQMNNNRYHEDQADFIQTSDAVRQLRALMPTLSTSQIRHAIERIAQITDVDSTD-YGKLTLRFLGTLTRSLKMQNAQIRRIRPDGTVLRYDDQIDIEAFRWSRYFLDELQLRRLSVGLRYLTDDDPDPDFVPDVPEGYVAVQYAHRLFSSSLANKRNRVTYTHPPTGMAYPSPTGRPHVH-MTINERAGMSKLVADNIIASVIKSNWVVDILDIE-----------YTAEVMTPSEGYTQHVDAESIMTAPKGKLFHLQFMDGLLRPEASGEDMRLIYPLQPSVARSMRAIVNHNEVDRPREMDTGTLSRNG--DLLYSPVANGQ--------- | |||||||||||||
9 | 5jcss | 0.11 | 0.10 | 0.96 | 1.67 | SPARKS-K | SGKTFLINELSKYMKLLIGTYPGTFEKEGKRELTIPSRGETVKAASTVRINEDHQKDSSNKIYNLNMGMRIWNVIELEEPSEEDLT-----HILAQKFPILTNLIPKLI-----------DSYKNVKSIYMNTKFISLNKGAHTRVVSLDILFKNNGINKPDQLIQSSVYSIFSEAADCFAGAIGEFKALEPIIQAIGESLDIASSRISLFLTQHVPTLENLDDSIKIGRAVLLKEKLNIQKKSMNSTLFASLRLMEQISVCIQMTEPVLVGETGTGKTTVVQQLAKMLAKKLTVINVSQQTETPKTVAVPIQENFTFSLKKNEKLHRCFNKNQWKNVVKLWNEAYKMAQSILKITNTENENENAKRLNTHEKKLLLDKWADFNDSVKKFEAQSSSIENSFVFNDLLTEPDSRSILLSEKGDAEPACMNPATDVGKRDLPMGIRS | |||||||||||||
10 | 3javA | 0.07 | 0.03 | 0.52 | 0.50 | DEthreader | VDNSIGKLEKGTITQ-R---T--LELVGQDVLQIFKLLQAPICRLCYRVLRHSQNQEYIAKFGLLEKHI--AETFLYLSDLCVTWDSKEIRSK-SV-REL--AQ-DAKE---------------------------------------------VCQRFPFSDKKNTFVKEIQFILNVRLD--------------NKQIKQRLSKLCEIMRVTMQHIFMNNFQLCSEIN-----KAKDDLMGLLGLYINNILIALNELVIKKNIILQRHK------SEEQNRNEKESTMLVTNLSQLS------------------------------------------------------------------------IGLLGHPPHMNVNP-Q----------------------------------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |