Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80
| | | | |
| Seq | AMLGALHPRAGLSLFVLYLLLAAALLRPQPLRQQQAVPEEFSAPLELSQPLSGLVDDYGIRPKHPWPRGPRPLLSRAQQRKRDGPDMAEYYYDA |
1 | 7bzbA | 0.07 | 0.06 | 0.97 | 1.00 | DEthreader | | LDRGEFNFCQFHYIQELKTLTKWWKDLDLASKLYIRD-R-LVESHLGLGYFEHYSL-GRIIVAIITMVVFEVMGEIEQEMPKGRSYVQVGYCFM |
2 | 4mycA | 0.06 | 0.05 | 0.93 | 1.00 | DEthreader | | AGLLCVAFGSVLFGELRNAVFAKVAQNAIRTVSLQTFQHLMKLDIFYDPGRIL------RVREELYRLWTIQEDLDHLENELKDQQELWSHPQ- |
3 | 5iv5L1 | 0.00 | 0.00 | 0.41 | 0.57 | DisCoVER | | ------------------------------------LADFLGFRPKTGD----IDVMNRQSVGSVTQFYEP-NI--E---------S--AIDV- |
4 | 1hxgA | 0.04 | 0.04 | 0.95 | 1.00 | DEthreader | | SIDNVANLLQMLHKQELAQVSRWWKDLFVTTLPYARDRV-ECYSA-LGVYFEQYSQ-ARVMLVTIMIVSILD--LYKDYELAGSHVCAITTSYM |
5 | 1vt4I3 | 0.06 | 0.06 | 1.00 | 0.59 | CEthreader | | GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG |
6 | 6nzkA2 | 0.09 | 0.09 | 1.00 | 0.52 | EigenThreader | | AFVCGDYAACKSQLVEYGSFCDNINAILTEVNELLDTTQLQVANSLMNGVTLLAATSASLFPPWTAAAGVPFYLNVQYRINGLGVTMDVLSQNQ |
7 | 6jp4A1 | 0.17 | 0.09 | 0.50 | 0.26 | HHpred | | -------------------------------YDGFKVSEEPVL---------------PEKEVHPSLWFTKSDIQKIKEKKNEDSFTAELWEE- |
8 | 4h3tA | 0.21 | 0.11 | 0.51 | 0.40 | MRFsearch | | -------PTLEPALLRLVLALAYRILR--------------------------------------GPKDDAEWGRLWEADRFSEDAIDDYFAR- |
9 | 6cfwI | 0.17 | 0.16 | 0.94 | 0.36 | FFAS-3D | | -MFGYWDPLYFIIVFIIGLILAYLLNSGMGTREVGEGTKIFISGEDPEKVIPGFEHLEGYYTGRNTMWGLVNGVKATLKNDHTG-LLPDY---- |
10 | 4xgcD2 | 0.14 | 0.14 | 0.98 | 0.82 | SPARKS-K | | --DDKIELLCGLSVLELCLIIAIKHHSQIYDRDSFNFAKVSTTMQAVERSIAELIMPLTKVQKEFEMALTYSQIHHCMQRYQALPTVAQWAQSS |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|