Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | RPVIPTEFGAKVPTNIRQRYLNLFIDECLKFCSSSQEAFDKALSEEKVAYERSTSRNIYLNVAVNTLKKLRSLVPNSPPCVNKTSNRKVVSHEAVLGGKLAAKTSFTLNQSGNLRAEDLTGAALYRRLKEYLLTEEQMKENGYPMPHPEKAGRAVVFTVE |
1 | 4r6hA | 0.08 | 0.06 | 0.78 | 0.70 | DisCoVER | | TIYSTMSTDSEPI--N--QAKDGLAYPPETMIVPF----------W--FA-----GYD-KSSFAQYYD--QFATPLLITDINMAQNKIAFTM--QGGTLGQVKVGIIPTPAIHDDPIWIGG--ER-----YTLAKQMAEATSLPSGL--KVEPYFLGGQ- |
2 | 5aezA | 0.05 | 0.04 | 0.74 | 0.83 | DEthreader | | QWGYSFAHIVVLFCLYQGMFAAVTAILMAGAGPMMVFLFIWLTVVYCPIYWWLVSALDAGGGPVENSGFAALAYSGK------------------------------------HS---SI-VMGTIFLWF-GWYGNGGYACNTNAATGTWLCMIAVGPAT |
3 | 1vt4I3 | 0.04 | 0.04 | 1.00 | 0.56 | CEthreader | | GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG |
4 | 4fjqA2 | 0.05 | 0.05 | 0.93 | 0.68 | EigenThreader | | FLIVDNQNEFNLLQSLHREELSQLSKWWKAFD----VKNNAIVECYFWALASRFEPQYSRARIFLAKVIALVTLIDDIYDAYGT--------YEELKIFTEAIERWSITCLDMIPYTEMEEILAKECGKEFVKDFVRVLDSIAVNLGGMSDIVRYKGILG |
5 | 2k0nA | 0.11 | 0.05 | 0.46 | 0.63 | HHpred | | -----VQDKDTLSNAERAKNVNGLLQVLMDINTTADKIRIHAKNFEAALFAKSSSKKEYMDSMNEKVAVMRNTYNTRKN--------------------------------------------------------------------------------- |
6 | 1y1yS | 0.16 | 0.11 | 0.71 | 0.55 | MRFsearch | | ------VDTAIYHHKLRDQVLKALYDVLAKESHPPQSILHTAKAIESEMNKVNNNEAAYKARYRIIYSNVISKN-------------NPDLKHKIANGDITPEFLAT------CDAKDLAPAPLKQKIEEI--AKQNLYNA------------------- |
7 | 2k0nA | 0.12 | 0.05 | 0.42 | 0.88 | FFAS-3D | | -----VQDKDTLSNAERAKNVNGLLQVLMDINDTADKIRIHAKNFEAALFAKSSSKKEYMDSMNEKVAVMRNT--------------------------------------------------------------------------------------- |
8 | 6n1lA | 0.10 | 0.08 | 0.81 | 0.64 | SPARKS-K | | --------RYQSYLEGVKYNVDSAIQTITKIYNTYTLFSTKLTQMKAKAKEEAATKEDLEKNFKTLLNYIQVSVKTAANF---VYINDTHAKRKLENIEAEIKTLIAKIKEQS------NLYEAYKAIVTSILLRDSLKEVQGIID-------------- |
9 | 3w3tA | 0.11 | 0.06 | 0.55 | 0.53 | CNFpred | | -------------PRVQYGCCNVLGQISTDFS---PFIQRTAHDRILPALISKLCTSRVQTHAAAALVNFSEFASKDILEP--------------------------------------YLDSLLTNLLVLLQNKLYVQEQA------------------ |
10 | 4wvmB | 0.03 | 0.03 | 0.89 | 0.83 | DEthreader | | --L-R--YDARNSLKASLLKVRNTLEAIVQVQCFQKICDDHMSKLQATIAKKLFAIDEDESALLNLFEENLQSPFSLMWMEFEENVLRCMDILTAKPKKMNNCETKG-------LSGRHYWEL-GAGVTLLFEYSYQQIKKTRVTVSSTGFMTHLH---- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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