Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80
| | | | |
| Seq | MFTRHTLFRQFAVLADTSFNYVKVKPLIVQSKLNLTGVISSSTGEHGSSLDNKYVDIVNDQLSYAPSGREKRKGKEKKNKENQFSHTSKPE |
1 | 6vs7A1 | 0.08 | 0.05 | 0.70 | 0.61 | DisCoVER | | TDDSGRVNRVIVRNIEGADNSTYLPGNATPAPGDRYTKYVRAEDAAGNITA-----LVDKQSERFVLVI---------------------- |
2 | 5voxP | 0.14 | 0.13 | 0.97 | 0.83 | DEthreader | | LKKQNASFNVVSLL-VQNLHNVVEKKNNNNILQNQTCYVIRLLQEAIYRVILHEKMP--FKLSLIWLLTFNQCSTRHKVQLLGNAPTWSPP |
3 | 1jmxA3 | 0.10 | 0.09 | 0.86 | 0.69 | CEthreader | | --KADALPGQWAFSGHMLAKGDVRGVMSVTPDQGDTFKVEV-----------KGAYADGTPFNGSGSAILYNGYEWRGNVKVGDANLRQVF |
4 | 6bfiA1 | 0.05 | 0.05 | 1.00 | 0.55 | EigenThreader | | LTPLVQGVGIAVTNLVQVAASVQQAAVFLSDAARLLPEGKRKLLDGARGVINGMSDLLMCADRSEVRKMVKVCRSVQEYLDVAKVIDVEAD |
5 | 3civA | 0.11 | 0.07 | 0.63 | 0.24 | HHpred | | -WGTDEARASMRALAEQPFNWVTLAFAGLMEHPGDPAIAYGP--PVTVSAHALGLKVCLK------------------------------- |
6 | 2pffB | 0.33 | 0.03 | 0.10 | 0.83 | MRFsearch | | -------------------------RVIVAGTLD--------------------------------------------------------- |
7 | 6melB3 | 0.11 | 0.07 | 0.62 | 0.30 | FFAS-3D | | ----SMIAKLYKLYMDKDMNMLEINPLIKTAEGDFYALDAKCSFDDSALYRHPEIAELRD------------------------------- |
8 | 5fmwA2 | 0.13 | 0.13 | 1.00 | 0.86 | SPARKS-K | | TSNFNAAISLKFTPGKGSFRFSYSKNETYQLFLSYSSKKASMKRKGVELKDIKRCLGYHLDVSLAFSEISVGAEFNKDDCVKRGEGRAVNI |
9 | 6g4qB | 0.07 | 0.02 | 0.32 | 0.56 | CNFpred | | --AAENMVKLYSLFLKYDATMIEINPMVEDS------------------------------------------------------------ |
10 | 2uvcG | 0.02 | 0.02 | 0.93 | 0.83 | DEthreader | | LVGDNEIRFTEVMEGRNDGVYTDYNTFQRKDEVPMSSI-V----ATSPVAKEVWRALIELVVFYLTMV-AVESNYDLRALDTLANVLNLKK |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|