Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80
| | | | |
| Seq | SAKGFSKGSSQGPAPCPAPAPTPAPASSSSCCGSGRGCCGDSGCCGSSSTSCCCFPRRRRRQRSSGCCCCGGGSQRSQRSNNRSSGCCSG |
1 | 3bogA | 0.13 | 0.11 | 0.88 | 1.65 | SPARKS-K | | --CKGADGAHGVGCPGTAGAAGSVGGGCDGGHGGNGGNGNPGCAGGVGGAGGASG--------GTGVGGRGGKGGSGTPKGADGAPGAP- |
2 | 3nggA | 0.20 | 0.10 | 0.49 | 1.67 | CNFpred | | ----------------PGLCPPRPQKPCVKECKNDDSCPGQQKCCNYGCKDECRDPIFVG------------------------------ |
3 | 5ml1A | 0.25 | 0.24 | 0.99 | 1.19 | MUSTER | | SSVFGAGCTDVCKQPCGCATSGCNCTDDCKCCKYGAGCCKQTPCCGSGKEDCRCQSCSTACKCAAGSCKCGKGCTGPDSCKCDRSCSCK- |
4 | 2jmvA | 0.03 | 0.02 | 0.64 | 0.74 | DisCoVER | | -------------------------------GSGPTYCWNEANRCNNKQCDGARTFCQGTSRKPDPKGPTYCWDDGARTCFCQGTAGHA- |
5 | 3cfiB | 0.06 | 0.06 | 1.00 | 0.61 | CEthreader | | ELQRALVMMDSDFRQIALRQTRTNGESKKLLHWADYLLDSDNKGIMVTKVGYRIKDERLERVWWRYPDTPAGQEGVVTNEWSNELTLPAA |
6 | 4u49A | 0.11 | 0.11 | 1.00 | 0.58 | EigenThreader | | SSDRTANPQSDYNNSNAASTAPAAASPECKAGGGITLSCQPPVGGSDGDICEDADKVLQQNAKNCGDCTNNGGNFGDVKEGKPPVCGVEK |
7 | 2kfwA2 | 0.22 | 0.10 | 0.46 | 0.24 | HHpred | | ---------------------------------GAHDH----H-HDHDHDGCCGGHGHDHGHEHGGEGCCGGK---------GN-GGCG- |
8 | 2kfwA2 | 0.21 | 0.10 | 0.47 | 0.93 | MRFsearch | | ---------------------------------------AHDHHHDHDHDGCCGGHGHDHGHEHGGEGCCGGK---------GNGGCGCH |
9 | 1tivA | 0.15 | 0.13 | 0.88 | 0.30 | FFAS-3D | | -----------DPNIEPWNHPGSQPKTACNRCHCKKCCYHCQVCFIKKGLGISYGRKKRRQRRRPSQGGQTHQDPIPKQPSSQPRGDPTG |
10 | 5ml1A | 0.17 | 0.17 | 0.98 | 1.56 | SPARKS-K | | SSVFGAGCTDVCKQPCGCNCTDDCKCQSCKYGAGCTDTCKQTPCGCGSGCNCCRCQSCSTACKCAAGSCCGKGCTGPDSCKC-DRSCCK- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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