>PF15776 (376 residues) PAGFQMAPCGCFFDPRIYRIEWATTDFGQSSLYKLTAVGGGGPPGAPAGGPASPGTYLLE PQHYLKAPVAAPPPPPYPHYQPAPGGPQYFLPYFPPEGPGPEALGFVGDGGPPAYMELPP PLLKEGLGPPPPPPVPKDNKLPSLLITLPTEATLPPGAYGHLKGRLSQFHGPSEPLAFPS KELQGGGAGSALLYPPGAAEPKVAEAEAAPLGAGEARTPEAARAFVLPEKVLLEDAMKLF DCLPGNAEPEGYPRKAPGPALPDSRGGGDDSSSDIRSLHLPDELLSFDYSVPEILDTVSN VDCFFNFKALDEEPPPRPGPPAANMVAPVVRPELPKRKAGSSSSKKGRQGGKGKQAVGLA GAAPSGPRQDLGAPPH |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 | | | | | | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | PAGFQMAPCGCFFDPRIYRIEWATTDFGQSSLYKLTAVGGGGPPGAPAGGPASPGTYLLEPQHYLKAPVAAPPPPPYPHYQPAPGGPQYFLPYFPPEGPGPEALGFVGDGGPPAYMELPPPLLKEGLGPPPPPPVPKDNKLPSLLITLPTEATLPPGAYGHLKGRLSQFHGPSEPLAFPSKELQGGGAGSALLYPPGAAEPKVAEAEAAPLGAGEARTPEAARAFVLPEKVLLEDAMKLFDCLPGNAEPEGYPRKAPGPALPDSRGGGDDSSSDIRSLHLPDELLSFDYSVPEILDTVSNVDCFFNFKALDEEPPPRPGPPAANMVAPVVRPELPKRKAGSSSSKKGRQGGKGKQAVGLAGAAPSGPRQDLGAPPH | |||||||||||||||||||
1 | 2pffB | 0.21 | 0.12 | 0.55 | 1.20 | MRFsearch | ----------------VRVIVAGTLDINPDDDYGFKQGGGGGGGGGGGGGGGGGGGG---------------------------------------GGGGGGGGGGGGGGGGGG-----------------------------------------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-------------------------GGGGGGGGGGGGGGGGGGGGGGGGGGGG-------------------------------------------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG------ | |||||||||||||
2 | 4btgA3 | 0.11 | 0.09 | 0.83 | 1.04 | SPARKS-K | -----------GFNLKVKDLNGSARGLTQAFAIGE---LKNQLSVGALQLPLQFTRTFSASMTSELLWEAYVYRVGRTATYPFDANARLWSPSTPKELDPSA--RLRNTNGIDLFIAYQDMVKQRGRAEVIEVSPFKLRPINETTSYIGQTSAIDMGQPSHVVVYEDWQFAKEITAFTPVKLANNSN-QRFLDVEPGISDRMSATLAPIGNTRGTVNSNGAEMTLGFPSERDYRDPMVAIAALRTGIVDESLEARAHNPEVVQGVAAEQGSLYLVWNVRTELRIVGYNIRTPEPLEAIAYNK--------PIQPSEVLQAKVLDLANHTTSIHIWP---------------------------------------- | |||||||||||||
3 | 3zphA | 0.05 | 0.02 | 0.48 | 0.61 | DisCoVER | ---FKF-EPMRSLIYVDCVSLQYKIITKYAFYPSFPI------------PPQGDR-FGY-AR-MQL---------TEHHWLVSETVLVWQGNPFIF-------AFLP--------------------------MWW--EKDLKGNYRFNMTI---GFPLQEC---T--R------VLASA-VK--------KD--------------------------INGCVMDWVLEIWFENQSGWYKV-M--------VDDMKALEKPSW-AQQDAFPF---LK-----PYHNVCSA--AV-ADY-TPSNNLA-------------------NYRGYI-------------------------------------------- | |||||||||||||
4 | 4tweA | 0.07 | 0.05 | 0.69 | 0.67 | DEthreader | -----------------------------AHRIRNLRELSR---RDEDLVQLLLQR------------------LLSFPSQEPTGGVVPYAAYAPPQGLVYANRGA-ALTRYGGVGRGAKAVNA-AKH----GVAGV---------LV-Y--TDPADINDTFWYLPPSGVER-TQPIALLCNLNGTLAPA-TWQGALGCHYRL-------------------------SWVHGAVDPSSGTAVLLELSRV--LGTLLKKGTWRP-RRSI---VFAS-W-----EE--FGLIGSTEFTEFLAYINVDIFARVQGT-QSVFATKEIRSPIYWVPSLGSLGA-----YAPFV-H-FLGISSDMLRTLNSHVLW-LGAAA | |||||||||||||
5 | 1vt4I3 | 0.13 | 0.13 | 0.99 | 0.62 | CEthreader | GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG---GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG | |||||||||||||
6 | 1i6vD | 0.07 | 0.07 | 0.96 | 0.72 | EigenThreader | IKDEVWDALEEVIHGKVVLLFQPVLVEGQSIQLH----PLVCEAFNADFDGDVPLSSEARIQMLSAHNLLSPASGEPLAKPSRDIILGLYYITQVRKEHGLLDLQDTVTTTSPGRILFARIVGEAVGDEKVAQELIQMDVPQELSTTSGITIGIDDAVIPENYPFNPLYVMAQSGARGNPQQIRQLCGMRGLMQKPSGETFEVPV-RSSFREGLTVLEYFISSHRTADSGYLTRKLVDVAHEIVVREGVCQKCYGYDLSMARPVSIGEAVGVVAAESIGEPGTQLTDITQGLPRVIELFEA-----------RRPKAKAVISEIDGVVRIEEGEDRLSVFEGFSKYKLPKDARLLVKDGDYVEAGQPLTRGAIDPH | |||||||||||||
7 | 1d3e3 | 0.09 | 0.04 | 0.39 | 0.34 | HHpred | ---IEMCQVDTLIPISMYTVTLSPQTKLAEEIFAIKVDIA-----S-HPLATTLIGEIASYFTHWTGSLRFSFMFCGTANT----TLKVLLAYTPPGIGKPRSR--------KEAMLGTHVVWDVGLQ-------------STVSLVVPWIS---ASQYRFTTPYITCWY------------------QTNFVVPPNTP-NTAE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
8 | 5xjcA | 0.16 | 0.08 | 0.47 | 0.40 | MRFsearch | -----------------------------KAFFTSKALN-MAIPGGPKFEPLVRDWNEFNDKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHT----------------------------------------------PNVVFIKTEDPDLPAFYFDPLINPISHRH----------------------------------------SVKSQEPLPDDDEEFELPEFVETANGIALLW----------------APRPFNLRSGRTRRALDIPLVKNVKVRVSYQKLKRYLFRSFKATKFFQSTK-------------------------------------------------------------------- | |||||||||||||
9 | 2xd8A | 0.09 | 0.08 | 0.84 | 0.60 | FFAS-3D | -----MANA-------------NQVALGRSN---------LSTGTGYGGATDKYALYLLFSGEMFKGFQHETIARDLVTKRTLKNGKSLQFIYTGRMTSSF---------------------HTPGTPILGNADKAPPVAEKTIVMDDLLISSAFVYDLDETLAHYELRGEISKKIGYALAEKYDRLIFRSITRGARSASPVSATNFVEPGGTQIRVGSGTNESDAFTASALVNAFYDAAAAMDEKGVSSQGRCAVLNPRQYYA----------LIQDIGSNGLVNRDVQGSALQSG-NGVIEIAGIHIYKSMNIPFLGKYGVKYGGTTGETSPGNLGSHIGPTPENANATGGVNNDYGTNAELGAKSCGLIFQKE | |||||||||||||
10 | 4btgA | 0.13 | 0.12 | 0.97 | 1.00 | SPARKS-K | FVCHVLSPLGFILAAYVYRVGRTAT-YPRRMLTALSSVDSKMLQATFKAKGALAPALIHLANAATTAFSRGNFDANAVVSSVLTILGRLWSPSTPKELDPSA--RLRNTNGIDLFIAYQDMVKQRGRAEVFSDEELSSTIIPWFIVSPFKLRPINMGQPSHV-VVYEDWQFAKEITAFTPVKLANNSNQRFLDVEPAPIGNTFAAVYEAVSQRGTVNSNGAEMTLGFPSVVERDYPMVAIAALRTGIVDESLEARAHNPEVVQGVAAEQGSLYLVWNVRTELRIVGYNIRTPEPLEAIAYNK--------PIQPSEVLQAKVLDLPWHEASTEFAYEDAYSVTIRNKRYTAEVKEFLGLGQRRERVRILKPTVAHA | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |