>PF15735 (390 residues) VSCSGGSRTVVHSLENDTDEGGLNKLKIRYEEFQEHKAEKPSLSQQAAHYMFFPSVVLSN CLSRPQKLAPVTYKLQQGNKQSRLKLNKKKHSFINHQEPASVNDVASVKESCYTQGNACS NIPDKDSALPSDLVQVPLEAFENKMPTSTANYTDCQFADGSLETEQSFGLCGNKYTLRTK RKVNYETEDSESSFVAHNSKINLPQPMESVESLDGSQKSRKRRKLSKKLPPVIIKYIIIN RFRGRKNMLVKLGKVDSSEERVVLTEEKMNLYKKLAPLKDFWPKVPDSPATKYPIYPLTP KKSHKRKAKHKSTKKKAGKPQKTGSKNIKRTLSFRKRTHTILSPPSPSYNAEAEDCDYNY SDVMSKLGFLSERSTSPVNTSPPRCWSPTD |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | VSCSGGSRTVVHSLENDTDEGGLNKLKIRYEEFQEHKAEKPSLSQQAAHYMFFPSVVLSNCLSRPQKLAPVTYKLQQGNKQSRLKLNKKKHSFINHQEPASVNDVASVKESCYTQGNACSNIPDKDSALPSDLVQVPLEAFENKMPTSTANYTDCQFADGSLETEQSFGLCGNKYTLRTKRKVNYETEDSESSFVAHNSKINLPQPMESVESLDGSQKSRKRRKLSKKLPPVIIKYIIINRFRGRKNMLVKLGKVDSSEERVVLTEEKMNLYKKLAPLKDFWPKVPDSPATKYPIYPLTPKKSHKRKAKHKSTKKKAGKPQKTGSKNIKRTLSFRKRTHTILSPPSPSYNAEAEDCDYNYSDVMSKLGFLSERSTSPVNTSPPRCWSPTD | |||||||||||||||||||
1 | 4apmA | 0.05 | 0.03 | 0.62 | 0.70 | DisCoVER | -------------------------------------------------------STPKIWG-------------------RYMA------KF-----------DLAKSHGSGIYVDLGGTERVGATQHR--MP-T---------G---------------------KCPV--MGKVINLGNNADFLNRISAENPQDRGLAFPDTILS---PV--SAADLV---------RWGYDGNDVACAEYAGRYPFVYDAKEEMCHILFTPMQYNRTSSLLCMEPMKLYYGSSRVCPMYPVKDAIFGRGASCVAIESAACSMFENAAADLESNSKGVGMNWANYDSRVIEETPNCL----IIDAGSF--AM-TAVGSPLEDAVPFPCIVTNGYIP- | |||||||||||||
2 | 5b7iA | 0.10 | 0.06 | 0.59 | 0.67 | DEthreader | ---------------ELLWRHKGFTRVQRFRWQDKA-C--FFGLNL-AS-TGCGTLANGRLYALAD---------PQRGARFSIAYREGLGDDDLA---I-VGGENSHVHFAGTLEDGLREWLG--S---------LLQA---RGGHQPLRLLLDEVFDALSLVQGSAFVAQRLAKLLP-R---HHT----------RISFGLLRLAPLILAILAGVHLCVYHIEQLDELKGRDHDY------SRSIILAGIRRGFSGEANLYL--P------------ARIDASPVEPVDEHRLRLLA-------------GVPLWWQ-P-----SLSGAL---------------------------------------------------------- | |||||||||||||
3 | 2oitA | 0.07 | 0.07 | 1.00 | 0.64 | CEthreader | EMDAMIPEREMKDFQFRALKKVRIFDSPEELPKERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESWLLEDSSRAELPVTDKSDDSLPMGVVVDYTNQVITISDEKTLPPAPVLMLLSTDGVLCP | |||||||||||||
4 | 1xi5A | 0.06 | 0.06 | 0.95 | 0.62 | EigenThreader | TAGKGQVLSVCVEENPDLVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAP------KGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQGQLNKYESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKS---VDPTLALSVYLRANVPNKVIQCFAETGQVQKIVLY---AKKVGYTPDWIFLLRNVMRIS-------PDQGQQFAQMLVQDEEPLADITQIVDVFMEYNLIQQCTAFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAILGNQMFTHYDNCYDPERLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLI-LVVRGQFSTDELVAEVEKRNRL | |||||||||||||
5 | 2pffB | 0.18 | 0.13 | 0.68 | 0.58 | HHpred | ----------LENPSNTPDKDYLLSIPIELRSYLKGATGHSAIAETDSWESFFVSVIGVRCYEAYPNTSL---------PPSILE-----DSLENNEGVPS---PM-L-----SISNL-TQEQVQDYVN-KTNSHLPA-----GKQV-EISVNGAK---NLVVSGPPQSLYGLNLTLR-KAKAPSGLDQSRIPFSEKFSNRFLPSPFHSHLLVPAS--------------DLINKDLVKNNAKD-IQIPV-YDTFDGSDLRVLSSERIVDC---IIRLPVKW-----ETTTQFKATHI-----------------LDFGPGGASGLRNKDGTGVRVIVAG----------TLDINPDDDYG----------------------------- | |||||||||||||
6 | 2pffB | 0.13 | 0.01 | 0.10 | 0.60 | MRFsearch | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GVRVIVAGTLDINPAAQDVWNRADNHFK------------------------------------------------------------------------------------DTYGFSILDI----------------------- | |||||||||||||
7 | 2xd8A | 0.09 | 0.08 | 0.89 | 0.40 | FFAS-3D | MANANQVALGRSNLSTGTGYGGATDKYALYKLFSGEMFKG----------------------FQHETIARDLVTKRTLKNGKSLQFIYTGRMTSSFHTPGTPILGNADKAPPVAEKTIVMDDLLISSAFVYDLDETLAHYELRGEISKKIGYALAEKYDRLIFRSITRGARSASPVSATNFVEPGGTQIRVGSGTNESDAFTASALVNA--------FYDAAAAMDEKGVSSQGRCAVLN-PRQYYALIQGLVNRDVQGSALQSG-------NGVIEIAGIHMNIPFLGKYGVKYGGTTGETSPGNLGSHIGPTPENANATGGVNNDYGTNAELGAKSCGLIFQKEAAGVVEAIGPQVQVTNGDVSVIYQGDVILGRADYLNPAA----- | |||||||||||||
8 | 5jcss | 0.09 | 0.08 | 0.93 | 1.24 | SPARKS-K | HQKDSSNKIYNVIELEEPSEEDLTHILAQKFPILTNLIPKLIDSYKNVKSIYMNTKFISLNKGAHTRVVSVILFKNNGINKPDQLIQSSVYDSIFSEAAGAIGEFKASLDIASSRISLFLTQHVPTLENLDDSIKIGRAVLLKEKLNIQKKSMNSTLFAFTNHSLRLMCIQMTEPVLKKLTVINVSQQDLLGGYKPKTVAVPIQENFETLFNATFSLKKNEKFHKMLHRCFN---------------------KNQWKNVVKLWNEAYKMAQSILKITNT--ENENENAKKKKRRLNTHEKKLLLDKWADFNDSVKKFEAQSSSIENSFVFNFVEGSLVKTIRAGEWLLLDEVNLATAD---TLESISDLLTEPDSRSDAEPIKCMNPAT | |||||||||||||
9 | 5uuuA | 0.14 | 0.03 | 0.21 | 0.44 | CNFpred | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------MYAMKCLDKKRIKMKQGETLALN----------------------RIMLSLVSTGDCPFIVCMSYAFHT---DKLSFILDLMNGGD-HGVFSEADMRFYAIILGLEHMH------------------------------------------------------------------------------------------------------------ | |||||||||||||
10 | 5yz0A | 0.08 | 0.05 | 0.59 | 0.67 | DEthreader | GEHG-------ILCQFIDILTKKSHEAK---------------------------ILLNSNRKILKIPFSEHGNLHHLCKHLFREDETVLDSEDGFIKELFVLRM------------------LTTGDIRAGSVKLSSKVNFPALQLSDELERALHYL-NETEISYFFNQLLLEMTQQREAKLW--V--CFPENET-GRMEETKYYDKLMPTDKDIRYIVLHFGRSL--G--------------------------------------------------------------------------------KMLL-EATFSE-------YIAGFSLYIEWVNTSRAYCSTAMSGDRHNILFDGTNMVNGMGPMGT-------------PYM | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |