>PF15671 (270 residues) AAGDKKRPPERSEGHLSSSWPSATLKRPPARRGPGWNRTQPPAPPGVSPQTSPGRARAPA TCATPRTTGSGYSPARTRTTYAATSAGTGTTAAGTSSGPGARPDAAARFSLSLTPEAVLV IQRRHLEKQLLARPRRPFPSPSTEPRRLLAPCPRARAAGSRRSGPASDPDTTPAAGLGRL APRPRAPLLTGGLQVPQLSPRSGSLRPVLKVSLLNERHRYDDVEYEEEEAEALDEGLVRK CTEWLRGVESAAASRDRAGALDARPHMSTL |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | AAGDKKRPPERSEGHLSSSWPSATLKRPPARRGPGWNRTQPPAPPGVSPQTSPGRARAPATCATPRTTGSGYSPARTRTTYAATSAGTGTTAAGTSSGPGARPDAAARFSLSLTPEAVLVIQRRHLEKQLLARPRRPFPSPSTEPRRLLAPCPRARAAGSRRSGPASDPDTTPAAGLGRLAPRPRAPLLTGGLQVPQLSPRSGSLRPVLKVSLLNERHRYDDVEYEEEEAEALDEGLVRKCTEWLRGVESAAASRDRAGALDARPHMSTL | |||||||||||||||||||
1 | 2pffB | 0.12 | 0.08 | 0.64 | 1.02 | MRFsearch | --------------------PDDDYGFKQGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG----------------------------------------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGQGSQEQGM--------------------GMDLYKTSKAAQDVWNRADNH---------------- | |||||||||||||
2 | 5jcss | 0.09 | 0.09 | 1.00 | 1.08 | SPARKS-K | HQKDSSNKIYNLNMIGMRIWNVIELEEPSEEDLTHILAQKFPILTNLIPSIYMNTKFISLNKGAHTRVVSVRDLIKLCERLDILFKNNGINKPDQLIQSSVYDSAADCFAGAIGEFKALEPIIQAIGESLDIASSRISLFLTQHVPTLENLDDSRAVLLKEKLNIQKKSMNSTLFAFTNHSLRSVCIQMTEPVLLVGETGTAKMLAKKLTVINVSQQTETGDVPIQENFETLFNATFSLKKNEKFHKMLHRCFNKNQWKNVVKLWNEAYK | |||||||||||||
3 | 3chxA | 0.06 | 0.05 | 0.82 | 0.71 | DisCoVER | --------HGEKSQQAFLRMRTLNWYDVKWKTSLNVNESMVLSGK-VHVFSAWPVANPKSSFLNAGEPPVLVRTAQFIGRSVSLEVGKDYAFSIDLKARRAGRWHVHAQINVEGGGPIIGPIIV--TA--E----LKGGVYKVPGRELTIQVKVGEYTAAGLRFLNPDVYLLADRGLSTDPLAPGETKTIEVKVQDARWDIERLSDLAYDTDSQI--G-GLLMFFSP-------KRYAT--EIG--G-----PVIPKF------------ | |||||||||||||
4 | 4pkcA | 0.06 | 0.04 | 0.72 | 0.67 | DEthreader | KR--E---WKHASAGEF--IEKVTAGIRMLRRGLNVLSTAFPLVQDYSDYS--------NSIVPPYETVLEDGL------------WAQG-----DICQIPAE-FTFICHYGKSRRFSNDLFAEPSIVFCIYPSIKHDIGQMEYASQRSEGGGS--IFP--A-KLLEIDLGQYQYA-INLC----ISTK---DVSRY-FEQRFLQMAC--VGLMEVSAADGGISPLLNQHVQFNVIVRVSGYSA-------------------------- | |||||||||||||
5 | 1vt4I3 | 0.09 | 0.09 | 0.99 | 0.70 | CEthreader | GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG----GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG | |||||||||||||
6 | 6dqwA | 0.07 | 0.07 | 0.97 | 0.60 | EigenThreader | RGYLLKGETVEGAIDRICTAAARRLYKPELKESFVEMIERGWGTERGLPISCGELRERSGAVSFMKLFDTAMDTISGAFAAYLDIDHPDIEEFLKIKSIGNPIQN-LFTGICVPDYWMQEMIDWHSYLQKNMIPFEGMEAKMKTTEIFKHISDKADKASQELAEPELLKGYGRRNTTTMAIAPTTSSSAILGQTSPGIEPFSSNYYMR------KNKGLDNEEVWRGIMLNGGSVQEKDVFISQLEIVQQAGIRQKFVDQGQSLNGVKSL | |||||||||||||
7 | 6fszJJ | 0.13 | 0.09 | 0.68 | 0.42 | HHpred | ----RRKRLADGLSVTQ-----KVFVR--SRNGGATKIV----REH--------YLRSDIPCLS---------RSC--TKCPQIVVPQNELPKFISDPLELSAPIGKHYVV--LDTNVVLQAIDLLENPN------CFFD-------VIV-PQIVLDEVRNKS----Y---------------PVYTRLRTLCRDS------DDHKR--FIVFHNEFSEHTFVERLPNETNDRNNRAIRKTCQWYSEHLKPNLNREAATK---------- | |||||||||||||
8 | 2pffA1 | 0.12 | 0.07 | 0.60 | 0.70 | MRFsearch | ----------------------------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG----------------------------------------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGVTFKDKYVLITGAG---------------------KGSIGAEVLQGLLQG------------------- | |||||||||||||
9 | 2xd8A | 0.10 | 0.08 | 0.80 | 0.44 | FFAS-3D | ATDKYALYLKLFSGEMFKGFQHETIARDLVTKRTLKNGKSLQFIYTGRMTSSFHTPGTPILGNADKAPP--VAEKTIVMDDLLISSAFVYDLDETLAHYELRGEISKKIGYALAEKYDRLIFRSITRGARSASPVSATNFVEPGGTQIRVGSGTNESDAFTASALVDEKGVSSQGRCAVLNPRQYYALINGLVNRDVQGSSGNGVIEIAGIHIYKSMN---------------------------------------------------- | |||||||||||||
10 | 4k0mC | 0.13 | 0.09 | 0.67 | 0.94 | SPARKS-K | ARTAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAADYVGGEEIIQAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-----------------------------AAAAAAAAAAAAAAAA--AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA---------------------------------------------------------- | |||||||||||||
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |