Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | IIRETGLYNLDYFIEEHEGGYEEMPILDYFPQAKFLKRVIKKEEISALLLDIALFFVNVILLYAYNKLTEKQFANFFIAIFVVDFDHLEEDYGDYGHFNPRILVSREADKYTFVSQEMLFDYKRCEKFYKHVSKVAGLGDFMFYRHYDDKNDLDTIYMVPNREGYSPVSL |
1 | 1bkjA | 0.06 | 0.04 | 0.66 | 0.61 | DisCoVER | | ----SIRKFTAVPITEQRTIIAGLAASSSVV-----------------SI--VRVTAQAYVES----------AAEFLVFCIDYQHADFTELTLIGDSIMAQNCLAAESGLGGVY---------------------IGGLRNSAADELLGLPENSAVLFGMC--LGHPD- |
2 | 4av3A | 0.06 | 0.05 | 0.84 | 0.83 | DEthreader | | P-LVLLGAVSASAGIGMGSMGVGFALLGLVLVYLIFGMGQVLVPFAMTVSGYALGCSIIAMFDRVGGGTKDGDGLDLESVAIPIFFLVLGCSSLTVLT--------GWAPTTLVGILFADYGLYVLSLFASYMSIPLLTVL-------------------GAMLAILANG |
3 | 3ijmA | 0.09 | 0.07 | 0.78 | 0.54 | CEthreader | | ----------------------YSHPISLKTLVQEDDIGVNAPIIHQSVIARLTAGLYPLYQSKK--------IPFEPLPETLT--------EGYSSPVPDVLLYDHQTEEAKVIIEVCQNSGLKHDTSKIVKLIDNAYGILEGFVFNYKTQQWLRYRLGDGGVATNSSF |
4 | 4gs1A | 0.07 | 0.06 | 0.96 | 0.68 | EigenThreader | | PVDAQRLDMARRRADAAPAFVHVIAFDLA----EPARA--EPAAAREGAATALRTWAEHAARLHADGSAGLLPASLMVTIGIGGSLLEAMDAADRRPGGDLMLVGAEDSLRGFRRTAANLMGQIDLFTRTVTAHAWMDGGSYLVVRRIRMLRGLLFMAWQGNPATGFVPV |
5 | 3zikA1 | 0.09 | 0.06 | 0.68 | 0.27 | HHpred | | ------LRTMGETL-KYS------------EDLDFILSDNTPEHRRNNMLRLCLDMMNNECQYIVKYR----HREVWWCFQGTDPKQK-VTSLLQCFIADKIPLLRHDKWLSLETDEVFPKKIASRLVKLNYQDLKFTNT------------------------------ |
6 | 2e28A | 0.15 | 0.14 | 0.93 | 0.53 | MRFsearch | | ---EEGVANIDEILEAADGPAEEVPVITATQMLDSMQRNPTRAEASDVAPVEAVKTMHQIALRTEQALHTALNLDVAAIVTPTVSGKTPQMVAKYRPKAPIIAVTSNEAVSRRLVYTKETTDEMLDVAVDAAVRSGLHGDLVVITAGVGSTNLMKVHVISD--------- |
7 | 4gt8A | 0.12 | 0.09 | 0.76 | 0.43 | FFAS-3D | | MLKDKSLGEIKDLVIDLQKKVP-MKVVHEIQDFKV------PKGIEDHLFRITQEAISNTLRHS-------NGTKVTVELFNKD---------------DYLLLRIQDNGKGFNVDEKLEQSYGLKNMRERALEIGA----TFHIVSLPDSGTRIEVKAPLNK------- |
8 | 2v54A | 0.10 | 0.09 | 0.96 | 0.62 | SPARKS-K | | LDKSGKTTQCMNIMESIPNTIKYLNFPQRTVTGKMIDDYLNDHIVNLLFCANRWEFASFIQEQLEQGI-------TLIVDRYAFSASMTLSKSYSGLPKPDLVIFLESGSKEINGEEIYEDVTFQQKVLQEYKKMIEEGDIHWQIISSEFEEDVKKELIKNIVIEAIHTV |
9 | 5k4bA | 0.08 | 0.06 | 0.76 | 0.60 | CNFpred | | ---------------------LTIKALNEWDSGVEWRRKLD--TQRGAVLANELNACKLAKWTVQALLA----GSDQLKFGYVSRASV-------RDSSKHVILETQQYKPNEFATQINLNMDNAWGILRCIIDICMNKDGKYLIMKDPNKPMIRLYDIPDNTF------ |
10 | 5z1fA | 0.08 | 0.06 | 0.83 | 0.83 | DEthreader | | TILF-YMIPIAFVSAITTVSFQILIFLAMPKLLLFLSKAEAIRAASGKYFYFSVFNFIGVTLAGTLFNLLATSLPSAFLYVKF---ERIPYPGDLSATPGDLIIYIAPLILFGTYFGWLLR-GMWPHIHQRILA-ALFLFQ------------------VMGYL-K---- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|