>PF15504 (455 residues) MHLPDESQWDETTCKLAICQHPQCWATIRRIERGHPRILGTPRKTTIDDEDKLPMLTIVN MSDSCIRAKRLAHHHLSGFTFTKPPSLLCPGSKVHSKFQGRPQKDLPNKDVIGNTDRSPK LSVLNLNETQLPSPQDVRNMVVIWIPEQPEKQMSQDWRKGRMKSTVEARMLTGRSGTQKT ETQLGPPEMIVPPPSPVNFFEQLSTESIPFWNQFDMVPQDLLKDLLPNEGKTMPSLEMKT QLAMMKKKPPLEKSRPDSAISAKMFLSVHRLTLQRPALRYPKHLNKFYYNLNTEGHKKQQ WQQKQLQQKLKTPPRRQEAKKKPKSDPGSQDILHKCSGAVAYGPRYGHRTLLGRKSDKKQ PQRMKSEGPTSRQDSKRRPQVEYSENYPDSFPDKDDPELSKTEPSKKDISAQKAVVLASQ GRSPEDLSDSTSRRRWSPELKLLRILQATDDEDEE |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | MHLPDESQWDETTCKLAICQHPQCWATIRRIERGHPRILGTPRKTTIDDEDKLPMLTIVNMSDSCIRAKRLAHHHLSGFTFTKPPSLLCPGSKVHSKFQGRPQKDLPNKDVIGNTDRSPKLSVLNLNETQLPSPQDVRNMVVIWIPEQPEKQMSQDWRKGRMKSTVEARMLTGRSGTQKTETQLGPPEMIVPPPSPVNFFEQLSTESIPFWNQFDMVPQDLLKDLLPNEGKTMPSLEMKTQLAMMKKKPPLEKSRPDSAISAKMFLSVHRLTLQRPALRYPKHLNKFYYNLNTEGHKKQQWQQKQLQQKLKTPPRRQEAKKKPKSDPGSQDILHKCSGAVAYGPRYGHRTLLGRKSDKKQPQRMKSEGPTSRQDSKRRPQVEYSENYPDSFPDKDDPELSKTEPSKKDISAQKAVVLASQGRSPEDLSDSTSRRRWSPELKLLRILQATDDEDEE | |||||||||||||||||||
1 | 6mkyA | 0.09 | 0.05 | 0.52 | 0.72 | DisCoVER | VKTL---CLRQNLIKCILRELDLYDNQIKKIEN----------------LEALTELEILDISFNLLR--NIEGVDKLTRLKKLFLVNNKISKIENLSN-------------------LHQLQMLELGSNRIENIDTLTNLESLFLGKNKI--T-------------------------KLQNLDALTNLTVLSMQSNRLT--K----IEGLQNLVNL-----------------------------------------------------RELY-LS-HN--GI------------------------------E--VIEGLENNNKLTMLDIASNRIKKILTELQEFWMNDNLLESWSDLDELKGARSLETVYLERNPLQKDPQYRVMLSVRQIDATF-------------------------------------------------------- | |||||||||||||
2 | 4xqkA | 0.03 | 0.02 | 0.61 | 0.67 | DEthreader | ---------KLRDY---------QQTAKENA---LAH---------FKEN-DRG-QLIMAPGTGKTFTSLKIALS----P--LQTLRGWNNDTELTMTDMLVVFSTSIEVIGAQFPEFDFIISDE----------------AHRTTGAHEA-A---KEA-SAF-K------V-------------------MY-QTATPKIYGSILLSSMDDESYGEVF-FR--MG----FGQAVSRDI---------------------------------------------------AFTRTIEESKHADGQMN-QK-VWLKPEARIVSNLTVIFVRI--AEGKDYGYIILPIVWILKPKQLKVIGVEFEWDKFEGAIFGKIVQKVG-------D---------------HLITKPIFEVNVSQAMESIVSELEKA----GFAK--EQENLEPLYESVRIII | |||||||||||||
3 | 1vt4I | 0.04 | 0.04 | 0.88 | 0.74 | CEthreader | GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-------------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG--------------------------------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG--------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG | |||||||||||||
4 | 5gm6G | 0.07 | 0.07 | 0.99 | 0.72 | EigenThreader | LTKPYVHKILVVAAPLLIDEDPMVRSTGQEIITNLSTVAVRNVTSRAAAVVAKALG-----VNQLLPFINAACHSRKSKIVQQIGILLGIGVLNHLTGLMSCIKDCLMDDHVPVRIVTAHTLSTLAENSYPYGIEVFVLSSFLKAVGSMIPLMDPEYAGYYTTEAMRIIRREFDSPDDEMKKTILLVLQKCSAVESITPKFLREEIAPEFFQKFWVRRVALDVTYTTVTLAKKLGCSYTIDKLLTPLRDEAEPFRTMAVHAVTRTVNLLGTADLDIAEAIGPHDVLVALLNNLKLRVCTAVAIGIVAKVCGPYNVLPVIMNEYTTPETNVQNGVLKAMSFMFEYIGNMSKDYIYFITPLLEDALTDRDLVHRQTASNVITHLALNCSGTGHEDAFIHLMNLLIPNIFETILEGLEALSQALGPGLFMNYIWAGLFHPAVYNNMYVMYQDAMVPFY | |||||||||||||
5 | 6tgbA1 | 0.17 | 0.06 | 0.36 | 0.42 | HHpred | IIMPGDVRNDGKTLPNAICKPMNEYRSVVYYQVKQPRWMET-VKVAVPIEDMQ--------------RIHL------RFMFRHRSSLESKD-----------------KG--EKNFAMSYVKLMKEDGTTLH---DGHDLVVLKGDS------------KK--MEDASA-YLTLPS---YRHHVENGGLSVSSRDVFGMMEHS--Q----SDEYDILVFDALIYIIGLI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
6 | 5uswA | 0.15 | 0.06 | 0.43 | 0.40 | MRFsearch | ----DGGQFTH---------LDAALKQAEKVKAGVSFIDIRPGAPEVSLQEELDTWISIDTSKAVVEEAVKVG-----------------------------------ADLINDVRALQEPNALKVAA----------VPVCLHQG--------------------------------------------------------------QPRTQTNPSYQDLFTDIS---------SFLSERIDACQSVGI---------AKDKLILD-------------------------TLAHNYQLLAELERFHQFG--------------------------LPLLAGSR-----------------------------------------------------------PKALSGSLACATIAAKGAQIIRV-------HDFEQTDIVKVCQAT------ | |||||||||||||
7 | 3cnfB | 0.10 | 0.09 | 0.94 | 0.55 | FFAS-3D | --KKIAESFEDPSSIVVVLEFPTENRIKGDIQN-----------------------VLLLFFSRWYPVEGIFVQRGATYTINAAGEFEFSGRNFPALFSDVPLAGANTIIAIMRLFTPFLRTDDLAIAANFPRASRNPQT---YIPYTNQRGTVTNEFASRFRTMQKATRSCTKQWLRHLETQFDNIAYATMSNFMLNFTNNFATHVAVVLYQSGVINGYLRENVVMPDYYDVVSRFANANLQMNNNR-YHESVLEIADIFDQADFIQTSDAVRQPTLSIRHAIERIAQITDVDSTDYGKLTLRFLGTLTRSLKMQNAQIRRIRPDDDQIDIEAFRWSRYFLDELQLRRLSVGLRLITNPRIARRFNGVRIMYLTDDDPDPDFVPDVPEGYVAVQAHRLFSSSLANKRNRPHVHMTINERAGMSKLIIASVIKSNWVVDILDIEYTAEVMTPSEG | |||||||||||||
8 | 5h7iC | 0.10 | 0.09 | 0.85 | 0.97 | SPARKS-K | ----------VPVIDLNRVDEEQLLPVVRAILLQHDTFLLKNYANK--------------------AVLDALLAGLTTKDLPDTSQ------GFDANFTG----------TLPLEDDVWLEQYIFDTDPQLRFDRKC--------RNESLCSIYSRLFKLGLFFAQLCVKSVVSSAELDCISTSHYATKLTRYFGVLTIFPCAK--------AIRYKPSTMATT--DNSWVSIDEPDTGTLLARWSQGMPLQIDPRANIVSLTIWLQ-DAMKFVKELFTVCETVLSLNALSRSTGVPPELHVLLPQISSMKRKIVQDDILKLLTIWSDAYVVELNSRGELTMNLP-KRDNLTTLTNKSRTLAFVERAESWYQQVIASSQRQKRYQQFLAFSLTRGQPYTETYDSLQDSTKEASEILAGLQGILPMDISVHQVDGGWNDKNRFSKLLQIHKSKQQD | |||||||||||||
9 | 5jc3A | 0.12 | 0.03 | 0.23 | 0.49 | CNFpred | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VIADDKRRDPFRERII-----------EIMQDIQKYCQLYPKSEFGSQPYEQWVIREERRAAKEEKRKERVCAEHLKKYNDALQIN-DTIRMVDAYNHLNNFYKELKRRKTAESDD------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
10 | 4r04A | 0.07 | 0.05 | 0.64 | 0.67 | DEthreader | ISKELIKAYILTLDEYNKLTTKYLQLKKLNESIDVF-------------------L-V--I----------------------------FTELLLLKFGGVYLNVIKIAFVINQALI-VKYLNLNPAIESDN-DTTKIFHPYQVRTIESLWSFNTSEFSVDSLSNESSF----------------V--SYDFN----------------------GANQYEV----------EEAIMSDLISEDIKTLLLDASVSPDTKFILNNLKLNIESSIGDYIYYEKLEPVKNNIDDLIDEFNLNAAFFIQSNLPTITIAAKELLDEHDPLLKKELEVVAFKTTFSIKVNGL----------------FVKNSDMLFNISFKLFGFENINFVIDKYFTLVGKTNGYVEFICDNNK---------------------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |