>PF15439 (377 residues) AYLKEKTEKRRRQEEAIKRIGGDVGRSNDGSYLGKHFRMGFMTMPAPQDRLPHPCSSGFS VRSQSLHSVGGADDESSACSRKQPPPKPKRDPNTKLSTSSETVNAGTTCKAGKQSDKTEA SAKPRPHSDEYTKKIPPPKPKRNPNTQLSTSFDETYIRKHSSMKSSSIKETSLSQASSPA GFSDKEEPVYIEMVGNILRDFKKDDNDDDDQSEAVYEEMKYPIFDDVGPDAKWSSVCNSD HHGYSSQCATPTVPDLEVTKSSLPSTPKGSLCDIPPPFPNLLSHRPPLLVFPPAPAQCSP NSDESPLTPLEVTKLPVLENVSYIKQSGASPSSVPPQTSGYQKVEKDMSTSHAVISSGRS SSPPHPSTLYRTSSPHV |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 | | | | | | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | AYLKEKTEKRRRQEEAIKRIGGDVGRSNDGSYLGKHFRMGFMTMPAPQDRLPHPCSSGFSVRSQSLHSVGGADDESSACSRKQPPPKPKRDPNTKLSTSSETVNAGTTCKAGKQSDKTEASAKPRPHSDEYTKKIPPPKPKRNPNTQLSTSFDETYIRKHSSMKSSSIKETSLSQASSPAGFSDKEEPVYIEMVGNILRDFKKDDNDDDDQSEAVYEEMKYPIFDDVGPDAKWSSVCNSDHHGYSSQCATPTVPDLEVTKSSLPSTPKGSLCDIPPPFPNLLSHRPPLLVFPPAPAQCSPNSDESPLTPLEVTKLPVLENVSYIKQSGASPSSVPPQTSGYQKVEKDMSTSHAVISSGRSSSPPHPSTLYRTSSPHV | |||||||||||||||||||
1 | 2nbiA1 | 0.13 | 0.12 | 0.89 | 1.38 | SPARKS-K | VLEECPIDECFLPYSDASRPPSCLSFGRPDCDVLPTPQNINCPRCCATECRPDNPMFTPSPGSPPI-CSPTMLPTNQPTP-----PEPSSAPSDCGEVIEECPLDTCFLPTSDPARPPDCTAVGRPDCDVL----PFPNNLGCPAC---CPFE---CSPDNPMFTPSPDGSPPNCSPTMLPTPQPSTP---------TVITSPAPSSQPSQCAEVIEQCPI-------DECFLPYGDSSRPLDCTDPAVNR-------PDCDVLPTPQNINCPACCAFE-CRPDNPMFTPSPGSPPICSPPSPEPSSQPSDCGEVPIKSDSARPVGRPDCNVLPFPNGCPSCCPFECSPDNPMFTPSPDGSPPNCSPTMLPSPSPSA | |||||||||||||
2 | 2nbiA | 0.17 | 0.16 | 0.98 | 1.20 | MUSTER | ADVLEEDECFLPYSDASRPPSCLSFGRPDCDVLPTPQNINCPRCCATECRPDNPMFTPSPDGSPPICSPTMLPTNQPTPPE--PSSAPSDCGEVIEECPLDTCFLPTSDPARPPDGRPDCDVLPFPNNLGCPACCPPDNPMFTPSPDGSPPCSPTMLPTPQPSTPTVITSPAPSSQPSQCAEVIEQCPI--ECFLPYGDSSRPLDCTDPAVNRPDCDVL--PTPQNINCPACCAFECRPDNPMTPSPDGSPPICSPTMMPSPEPSSQPSDCGEVECPIPKSDSARPPDVGRPDCNVLPFPNNIGCPCCPFECSPNPMFTPSPDGSPPNCSPTMLPPSPSAVTVPLTPAPSSAPTRQPSSQPTGPQPSSQPSECADVL | |||||||||||||
3 | 2g8gA2 | 0.06 | 0.04 | 0.64 | 0.75 | DisCoVER | -----------------------------------GADGVGNASGDWHCDSTWGHVTTTSTRTWVLPTYKRLGESLQSNTYNGFS-------TPWGYFDFNHFWQINNN----------------WGMRPKAMRVKIFNIQVKLTSTVQIFADSYYVMDAGQEGSLPPFVPQYGYCCLEYFPSQMLRTGNNFEITYSFEKVPFHSMYAHSQNRDI-----YYQGPIWAKIPHTDGHFHP-------------SP-LIG-----GFGLKHPPPQIFIKNTPVPAFITQYSTGQVSVQIDWEIQKEVQFWAPTEPRAIGTR---YLTHH-------------------------------------------------- | |||||||||||||
4 | 5a10A | 0.07 | 0.07 | 0.92 | 0.56 | CEthreader | ---SPEFMARTLQGEWMKVEQKGGQVPAPRSSHGIAVIGDKLYCFGGEDPPYESIDNDLYVFDFNTHTWSIAPANGDVPKTRVLGTRMVAVGTKLYVFGGRNKQLEFEDFYSYDTVKEEWKFLTKLDEKGGPEARTFHSMTSDENHVYVFGGVSKGGLNATPFRFRTIEAYNIAEGKWAQLPDPGEDFEKRGMAGFLV---------VQGKLWVFYGFATANDPKIPTLYGSQDYESNRVHCYDPATEVETTGFEKPSRRSCFAHAAVGKYIIIFGGEIERDPEAHQGPGTLSREGFALDTETLVWERYEGGPIKPSNRGWVASTTTTINGKKGLLVHGGKLMTNERTDEMYFFAVNSST----------------- | |||||||||||||
5 | 6vbu4 | 0.06 | 0.05 | 0.84 | 0.67 | EigenThreader | LEGNIQESLRLFQMCAFLSPQCADNLKQVARSLFLLGK-----HKAAIEVYNEAAKLNQKDWEICHNLGVCYIYLKQFDKAQDQLHNALHLNRHDLTYIMLGAIEIYKKAVEFSPENTELLTTLGLLYLQLGIYDPTN-----------YKAILAAGSMMQTHGDFDVALTKYKVVACAVIES------PPLWNNIGMCFFGKKKYVAAISCLKRANYLADWKILYNLGLVHLTM--------------------------QQYASAFHFLSAAINFQPKM-------GELYMLLAVALTNLEDSENAKRAYEEAVRLDKCNPLVNLNYAVLLYNQGEKRDALAQYQEMEKKVSSSLEFDPEMVEVAQKL------- | |||||||||||||
6 | 5xtbI | 0.28 | 0.06 | 0.20 | 0.33 | HHpred | -------------------------------------------------------------HDLKLQLRYQ--E---ISKRTQPPPKLPVGPSHKLSNNYYC----TRDGRRESV----------PPSIIMSKKAVTPAPP---IKRWELSSDQPYL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
7 | 2mk0A | 0.26 | 0.04 | 0.16 | 0.87 | MRFsearch | -----------------------------------------------------------SARPPDCTAVG---------------------------------------------------------------------------------------------------------------------------------------------------------------RPDCNVLPFPNNIGCPSCCPFEC--------------------------------SPDNPMFTPSPDGSPPN----------------------------------------------------------CSPTMLPSPS-------- | |||||||||||||
8 | 2xd8A | 0.08 | 0.06 | 0.76 | 0.59 | FFAS-3D | ----------------------------------------------------------MANANQVLGRSNLSTGTGYGGATDKYALYLKL-FSGEMFKGFQHETIARDLVTKRTLKNGKSLQFIYTGRMTSSTPILGNADKAPPVAEKTIVMDDL-----------------------------LISSAFVYDLDETLAHYELRGEISKKIGYALAEKYDRLIFRSITRGARSASPVSATNFVEPGGTQIRVGSGTNESDAFTASASSQGRCAVPRQYYALIQDINGLVNRDVQGSALQSGNGVIEIAGIHIMNIPFLGKYGVKYGGTTGETSPGSHIGPTPENANATGGVNNDYGTNAELGAKSCGLIFQKEA--- | |||||||||||||
9 | 6f1tg | 0.08 | 0.07 | 0.86 | 1.35 | SPARKS-K | EFLSFFDHSTRIVERALSEQINIKLSLNRQFFDERWSKHRVVSDWSSQYPELYNNNEDAPHEPDGVALVWNMKYKKTTPEYVFHCQSAAKFHPNLVVGGTYSGQIVLWDNRSNKRTPVQRTPLSAAAHTHPVYCVNVVG-TQNAHNLISISTDKICSWSLDMLSHPQDSMELVHKQSKA----------------VAVTSMSFPVGDV-NNFVVGSEEGSVYTACRHGSKAGISEMFEAAVGAVDFSHTKNNKPLYSFEDN-------AGYVYD--------------VMW-------SPTHPALFACVDGMGRLDLWNLNNDTEVPTASISVEGNPALNRVRWT---HSGREIAVGDSEGQ----IVIYDVGEQIA | |||||||||||||
10 | 6fb3A | 0.06 | 0.03 | 0.59 | 0.67 | DEthreader | ---------------------------------------------------N-YTITRMFDLVASFEDYGQKVYSDALLQGFE-----------LNVKSG-IL-H-KGNGE----------N-QF-LTQQ-PAVITSIMGNRICLLAPVA------------------------------EFKHSNNPAHKYYL-------------------RGIAVMYFVDIRKSTLLGSNDLTAVRPLS-CDSSMDVQVRLEW-----------YVLEN---------------ISYISLRLLAGATDAHEGREWRRVRLISGKEIYINQISKVQYYWMELKTTKYTYDYLQSRYSYDLNGNLDRILFLQRVFEYTRQYRYDRA | |||||||||||||
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |