Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100
| | | | | |
| Seq | ILLPLILAVVLLLLMVASLVVWRMVKQQKKAAGISPEQVLQPPEGDICYANLSLQKTENSGSSQKKAPTRSSSCTQANAGEVEYVTMTPFPREDIAYAALSLETSDQ |
1 | 5da0A2 | 0.08 | 0.06 | 0.68 | 0.72 | DisCoVER | | ------DGTRTYRVRGQL------F-------FVSTHDFLFTHPARRVVIDLSDAHFWDG------SAVGALDKVMLKFQGTSVELR-------G-LNAASATLVE- |
2 | 4l6rA2 | 0.03 | 0.03 | 0.90 | 0.83 | DEthreader | | AKMYSSFQVMYTVGYSLSLGALLLALAILGGLSKNAIHANLAS-VLSSVMIVNYL-GNFFIFVRIQLVKMKLAKSTLTL---L------VFAFVKFDLFQLVYCNEV |
3 | 1q6uA | 0.11 | 0.11 | 1.00 | 0.84 | CEthreader | | QDAFADKSKLSDQEIEQTLQAFEARVKSSAQAKMEKEKGVKTSSTGLVYQVVEAGKGEAPKDSDTVVPLSFRLLKNIKKGGKIKLVIPPIPPNSTLVFDVELLDVKP |
4 | 3k66A | 0.06 | 0.06 | 1.00 | 0.62 | EigenThreader | | DPKGAEKFKSQMNARFQKTVSSLEEEHKRMRKEIEAVHEERVQAMLNEKKRDATHDYRQALATHVNKPNKHSVLQSLKAYIRAEEKDRMHTLNRYRLRYIDLRINGT |
5 | 2jo1A | 0.18 | 0.07 | 0.42 | 0.30 | HHpred | | -IGGLVIAGILFILGILIVL-SRRCRCKFNQQQRTGE----PDEEEGTFRS-------------------------------------------------------- |
6 | 2l2tA | 0.10 | 0.03 | 0.29 | 0.30 | MRFsearch | | --AAGVIGGLFILVIVGLTFAVYVRRKSIKKKR-------------------------------------------------------------------------- |
7 | 5z62N | 0.07 | 0.05 | 0.64 | 0.42 | FFAS-3D | | ---PSLIPLFVFIGTGATGATLYLLRLALFNPDVCWDRNNPEP----------WNKLGPNDQYKFYSVNVDYSKLKKERPD-------------------------- |
8 | 7jnaA | 0.12 | 0.12 | 1.00 | 1.00 | SPARKS-K | | VFSVLLIFIYLLLMAVAVFLVYRTITDFREKLKHPVMSVSYKEQAQLLSCKHHYEVIPPLTSPGQPGDMNCTTSNQTVKSALIVQGPREVKKRELVFLQFRLNKSSE |
9 | 4zivA | 0.19 | 0.07 | 0.39 | 0.58 | CNFpred | | TLTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRK----------------------------------------------------------------- |
10 | 5tw1D | 0.07 | 0.07 | 0.91 | 1.00 | DEthreader | | EIIVNNEKRMLQESVDALFDSLSDLLKGRFRNLLGKRVLNPTLHRLASPASGFARTLATDA-VDANG-VI--AIDAL--GRSVEVGIAQG---T-AASFTVLAAICS |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|