>PF15239 (287 residues) SDMERIGLFSEMSYVTIGDKYVSHYMRPFNEAASKNKQMLPGGTKTLSALQAGYFEPQFV RIFDGEAYSNPVQLRRRYRLAESKKNLGKAFLPSNGDKLPCGLGSYYGTIGGPYAYFSPQ LKDRERYVPPGKNFYTNPGKKGTGYGYANLTIGEQYPHEPDEYEAERINAKKAQEEHKRL IKGGPFKLNLYPQKYFDTNPYFNDKLLPPVKKPPPEKPIVPPFKPSSPAKKPGGMKGGTF DPYPSHSADPYVIKKSKAVTTDKERQIFHPAPGPKSRPVTSIITLNV |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | SDMERIGLFSEMSYVTIGDKYVSHYMRPFNEAASKNKQMLPGGTKTLSALQAGYFEPQFVRIFDGEAYSNPVQLRRRYRLAESKKNLGKAFLPSNGDKLPCGLGSYYGTIGGPYAYFSPQLKDRERYVPPGKNFYTNPGKKGTGYGYANLTIGEQYPHEPDEYEAERINAKKAQEEHKRLIKGGPFKLNLYPQKYFDTNPYFNDKLLPPVKKPPPEKPIVPPFKPSSPAKKPGGMKGGTFDPYPSHSADPYVIKKSKAVTTDKERQIFHPAPGPKSRPVTSIITLNV | |||||||||||||||||||
1 | 2bfuL | 0.05 | 0.04 | 0.80 | 0.78 | DisCoVER | -TKFAQTRVLLGDVLLDEYLIKVTATTNISDNSG-CCLMLAINSGVTDVYTICSSMTWNPGCTFNCGDSWSAEMISRSR-------VRMTVICV-----SGWTLDVIAKLDWSIVNEKCEPTI----YHLADCQNWLPLNRWM-GK--LTFPQGVTSEVR-------------------RMPLSIGGGAGALANMPNSWISMWRYFRG--------ELHFEVTKMSSIKATVVQFAEEKCTLVFSAWSTQVYLYAII-----HDSTTGGDFNL--GVKLVGIFCGI- | |||||||||||||
2 | 6rc9A | 0.05 | 0.03 | 0.69 | 0.67 | DEthreader | TTYDPL-RGL----GLPQQRTESGGALKVKSEESQQLKADDFGTAL-S-P-TPWR-P-WLA---TEQIHK----------------WKDVLQTTGFFN----RHPEWFADNPIALPAYFANIGNVFGGN-GHVTKS-A-H-T--APLS--------------G--VFRVTGWPYALLFSNFEYMGDTATAQGEDLQLF-QPNSLFSTFNLLDQDYTGGSIWTP---RDQSDSQGSTTALALDPVRLR-QSLKDDVDGI----------------------------- | |||||||||||||
3 | 1vt4I3 | 0.09 | 0.09 | 1.00 | 0.57 | CEthreader | GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG | |||||||||||||
4 | 6tnfA | 0.03 | 0.03 | 1.00 | 0.58 | EigenThreader | KLAVRFQKDVSEAWIKAIENSTSVSDHKVLDLIVLLLIHSTNSKNRKQTEKVLRSKIRLGCMPEQLMQNAFAVVSFGSCMYKQAFAVFDSYCLVTHVCSGNETELDISLDVLTDYATFVKTILDSMQKLNPCQIWLSSSVPNHKQMGIIGAVTMMGSVAGFCCEQTPEVLAYDELANLIEKQKGNLDLQLLDKFGKSLVEDFPNDFVVDLSPTVDGSFLFPVKSLYNLDEDETQGAIAINLLPLVSQKRVVSPICLSPCFRLLRSLEEIDALLGCPLYLTDLEVEGK | |||||||||||||
5 | 5zibA | 0.13 | 0.08 | 0.64 | 0.29 | HHpred | ---------ETKLFVGLGFPYEGPAP---LEAIANGCAFLNNPPKS--SKNTDFFIGKYAEVFIGRPHVNQEEVEDAVKAILN-QKI-EPYMPYEFTCEG---------MLQRIEKFCHG-QVMWPPLSALQVKLAEPGQ-----SCKQVCQESQPSFFQHL-NKDKDMLKYKVTCQSELAKLVPSFDPKNKHCVFQGDLFSCAGAHPRHQRVCP------------------------------------------------------------------------ | |||||||||||||
6 | 2pffB | 0.18 | 0.06 | 0.31 | 0.62 | MRFsearch | -----------------DDDY--------------------------------------------------------------------GFKQGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG---------GMDLYKTSKAAQDVWNRADNHFK--------------------------------------------------------------------------------------------------------- | |||||||||||||
7 | 2xd8A | 0.06 | 0.05 | 0.84 | 0.53 | FFAS-3D | --------MANANQVALGR-----------------SNLSTGTGYGGATDKYALYLKLFSGEMF-------------------KGFQHETIARDLVTKRTLKNGKYTGRMTSSFHTPGTPILGNADKAPPVAEKTIVMDDLLISSAFVYDLYELRGEISKKIGYALAEKYDRLIFRSITRGARSASPVSATNFVEPGGTQIRVGSGTNESDAFTASALVNAFYDAADEKGVSSQGRCAVLN--PRQYYALIIGSNGLVNRDVQGSALQSGNGVIEIAGIHIYKSMNI | |||||||||||||
8 | 6em5m | 0.10 | 0.09 | 0.86 | 1.24 | SPARKS-K | -----------YSKYADGSDRIIKPEINPVYDDAETQN-------TIGNIPLSAYDEMPHYDINGKRIMRPAKGSALDQLLDSIELPEGW----TGLLDKNSGSSLNLTKEELISKIQRNEQTDDSIYEPLIDWFTRHEEVMPLTAVPE----PKRRFVPSKNEAKRVMKIVRAIREPPKKLKEMKEKEKIENYQYDL--WGDSTETNDHVMHLRAP------------KLPPPTNEESYNPPEEYLLSPEEKEAWENTEYSERERNFIPQKYSALRKVPGYGESIR | |||||||||||||
9 | 6rw9A | 0.05 | 0.03 | 0.71 | 0.67 | DEthreader | YGIVHSTQWTQDNLIRGQAVLALSGTLTVLKPELT-WAQLAV----------------------------SENVRP--LA--LQNQSEPRNESIWLLV----LLADAIAG--L---KRYSTWAGVLFVLRTQTGNTMEQLSQSELNTLNGFQYLTPEANRLSQP-GLLMQALGLLGDK-PV---SIFS----------NGWENPSSNAAD-----------DSRALYDENV-E-RRRRQEWEIQKNAEIRQIDAQLEALAVRRTATEMQREEI-------------- | |||||||||||||
10 | 2atyA | 0.08 | 0.08 | 0.99 | 0.78 | MUSTER | YSTPAVGRYSLIGEKSLLCITKDKVDGTWDKPAPKCEYFNKYSSCPEPIVPGGYKIRGSTPYRHGDSVACKTNFSMNGNQANNMWGPTRLPTCVSVFPLEGSIEGRGGELADPEVPRDCGCKPCICTVPEVSSVFIFPPKPKDTITLTPKVVVDISKDDPEVFVDDVEVHTAQTQPREEQFNSTFRSVSEMHQDWLNGKEFKNSAAFPAPIEKTISKTKGRPKAPQLYTIPPPKQMAKMITDFFP----EDITQWNGQPAENYKNTQPIMNTNESYFVYSKLNVQKS | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |