Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | MAPKKRASGPPAKAGETRKRKSSSEASPSTPKKMPKVGKRGKAGPGGRGGKKHAAGKKMAAVGAPEAGSGPAPPGPSQPPSQELPPCKVPVKEEPVGEPDPLSQETQLEDPLSQETQLEEPLSDVMTVSTSSEPLSDVMTFE |
1 | 2pffB | 0.19 | 0.11 | 0.56 | 1.68 | MRFsearch | | ---FKQGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG----------------------------------------------------------- |
2 | 6em5m | 0.11 | 0.11 | 0.99 | 1.58 | SPARKS-K | | RNEQTDDSINPEPLIDWFTRHEEVMPLTAVPEPKRRFVPSMKIVRAIREGRIIPPKKLKEMKEKEKIENYQYDLWGDSTETNDHVMH--LRAPKLPPPTNEESYNPPEEYLLSPEEKEENTEYSERERNFIPQKYSALRKVP |
3 | 1r5sA | 0.18 | 0.17 | 0.92 | 1.00 | MUSTER | | LGSPSKDCGSPKYAYFNGCSSPTAPLSPMSPPG-YKLVTGDRNNSSCRNYNKQASEQNWANYSAEQNRMGQAGS----TISNSHAQPFDFPDDNQNAKKVAAGHELQPLAIVDQR-----PSSRASS-RASSRPRPDDLEI- |
4 | 2jqaA | 0.07 | 0.06 | 0.80 | 0.70 | DisCoVER | | ----PVTVQGAT-V-----AAVPPSIRDTAAYMTLTNKSDQPIKLVGAATPL--ATSPMLMTTTHSGGMAGMKMVPWLTIPGTLTLQRGDHVM--------------LMGLKRPLKVGETVNITLKATDRTLNVAA-TVKK- |
5 | 1mdaH | 0.06 | 0.06 | 1.00 | 0.61 | CEthreader | | HIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQM |
6 | 4gkwA | 0.06 | 0.06 | 0.99 | 0.53 | EigenThreader | | QKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQQ--NQQSLDMRKLGELEADLKEKDSMVESLTETIGILRKELENEKLKAAENMDSFEKLSMENENLKEKIAHYRAQR |
7 | 6ehzA | 0.41 | 0.08 | 0.19 | 0.22 | HHpred | | -------------------------------RREEKVGKKEKIGKKKRQKKRKAAQKR------------------------------------------------------------------------------------ |
8 | 2pffA1 | 0.17 | 0.10 | 0.56 | 1.18 | MRFsearch | | ---GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG----------------------------------------------------------- |
9 | 2k7mA | 0.11 | 0.08 | 0.72 | 0.46 | FFAS-3D | | -GPLGQGLTPPPDFNQCLKNSPDEKFSDFSNNMGSRKNPDPLATEEVPNQEQIPEEGFIHTQYGQKPEQPSGASAGHRFPQGYHSDKRRLSKASSKARSDDLS--------------------------------------- |
10 | 4nl6A | 0.16 | 0.15 | 0.97 | 1.47 | SPARKS-K | | KAYDKAVASFKHALKNGDICETSGKPKTTPKRKPAKKNKSQKKNTAASLQQW----KVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGNLSDLLSPICEVANNIEQNAQENENESQSTDESENSRSPGNKSDNIKPK |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|