Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | GYQLWSPWTPLDESFQWLRHTTPTPSSKHPFRASPCFPHTPSDLEVQLCFQEVTLVLDSPFLETGVSPKLPCHTSEPRTMNNNKGLVRKPQPVRLSGVDSVFGRVITAQPPKWTGTFRVSDKSAFCKIISRENQWPTGLKEPQIQMTVTMCKQMLRSILLLYATYKKCTFALQHSK |
1 | 3idaA2 | 0.09 | 0.07 | 0.85 | 0.62 | DisCoVER | | DTAYT----PF--YL--GGSGAANTSTGGGTLSISGTESADTY--LY-DPADPVPSLGGTLGPADQRDVLCYS------TEVLTDPVEVTGTVSARLF--VS---SSAVDT-DFTAKLVDAIALCDGIFLPGHRSSSNFPKYDR-NSNTGCTAVNRIHR-GPEHPS-HIVLPIIK- |
2 | 6nbqF | 0.09 | 0.06 | 0.71 | 0.83 | DEthreader | | ----------------------VTTAFLLYSDMYFYLSL----GS--ML-------LVVSPQVYIFEGMYLAQKFVTNVGGIFLGPAKAWLPDAM--PISA---LIHAA-------TMVAA-G-VFLIAIWTGVGVGAY-SAGLFHLMTHAYFKAMLFLGSGSVIHSMEVVNPDL- |
3 | 1eg1A | 0.11 | 0.11 | 1.00 | 0.56 | CEthreader | | GVDYAASGVTTSGSSLTMNQYMPSSSGGYSSVSPRLYLLDSDGEYVMLKLNGYLSQMDENGGANQYNTAGANYGPVQTWRNGTLNTSHQGFCCNEMDILEGNSRANALTPHSCTATACDSAGCGFNPYGSGYKSYYGPGDTVDTSKTFTIITQFNTDNGSPSGNLVSITRKYQQNG |
4 | 3g67A | 0.07 | 0.06 | 0.96 | 0.53 | EigenThreader | | VNLNRLFQELVGDFQAKSDQLVSVIQDMEKISENIMEELKKSGTNVDQIVERVK---EASSQIGETLENIRSIEKLIQNIMRIARETNILALNATIEAARAG----EAGKGFMIVANEVQNLSNETNEVTKQIVEKAREILESSQRSLENLEFMDTSKESLSEKSAEIDSATKVLE |
5 | 3nf5A1 | 0.18 | 0.07 | 0.41 | 0.30 | HHpred | | --------------------DDLEF-----VDENYY--ISPSLDTLATLKYEIQK------------------VENLVVGNKQYGKIEFLDPVDLSDIPSICDDLVVFQP----S-VLLYNNS----------------------------------------------------- |
6 | 2c2uA | 0.21 | 0.05 | 0.22 | 0.42 | MRFsearch | | ----------------------------------------------------------------------------------------------------------------------------------------HYLEEKEFQTVAETLQRNLATTISLYLKFKKYHWDIRG-- |
7 | 6enyG | 0.10 | 0.10 | 0.96 | 0.42 | FFAS-3D | | ----WDFLKKIKDPDDWDEAKIDDPTDSKPEDWDKPEAKKPEDWDEEMDGEWEPPVIQNPEYKGEWKPRQNDYKGTWIHPEDNPEYSPDPSIYAYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETW---GVTKAAEKQMKDKQDEEQRLKEEEEDKKRKEEEEAEDKE |
8 | 5aftV | 0.08 | 0.06 | 0.83 | 0.74 | SPARKS-K | | --------------SGNKVSRQSVLCGSQNIVLNGKTIIMND---CIIRGDLANVRVGRHCVVK-SRSVIRPPFKKFSKGVAFFPLHIGDHVFDCVVNAAQIGSYVHVGKNCVIGRCVLKDCCKILDVLPPETVVPPFLPECTQELMIDVTKSYYQKFLPLTQV------------ |
9 | 5bptA | 0.06 | 0.03 | 0.46 | 0.47 | CNFpred | | ---------------------------------------------------------------------------------------------KIATISEVYGSCLRLCLSSLSVVTELTTTPEITYFQLDTSLLSD--YLPEVTRMARKFTHISTLLQYLQLSLTCMCEAWEEIL |
10 | 6kuwA | 0.06 | 0.05 | 0.74 | 0.83 | DEthreader | | ------F---GNVNFLVSLAS-----------GVYLALD-VLFCTSSAVHLCAISLDRYW---T---QAVEYNLKR-----------------VYRIYRVAKLR--TGIDCSFWNESRYVFGLVALLDIITNETGFRENCKKRAMSFSVAQAREKRFTFVLAVVMGVWVLCWFPFS |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|