Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| Seq | RWLLQLLMQLGSVLLTRCPFWGCFSQLMLYAERAEARRKPDIPVPYLYFDMGAAVLCASFMSFGVKRRWFALGAALQLAVSTYIAYVGGHVHYGDWLKVRMYSRTVAIIGGFLVLASGAGEMYRRKPRSRSLQSTGQVFLGIYLICVAYSLQHSKEDRLAYLNHLPGGEFMVQLFFLLYGVLALAFLSGYYVTLAAQILAVLLPPVMLLIDGNVAYWHHTRRVEFWNQMKLLGENVGIFGAAVILATD |
1 | 4a01A | 0.09 | 0.08 | 0.89 | 1.00 | DEthreader | | --AILPGTEILIPVCAVIGIAFALFQWLLVSKRTEAKGVGAFAFSGAVMGFLAANGLLVLYIAILLTLPLIVSSVGILVCLLTTLFATDFFEIEPKKQLVISTVLMTIGVAVVSFV-ALPSFTIFQKVKWQLFLCVAVGLAGLIIGFVTEYTSNAYVQETDALDAAGNTTAAIGKGFAIGSAALVSLALF-----------------------D-KKIEKHAVIGDTIGDPKDTSGPSLNILIKLMAS |
2 | 3rkoB | 0.11 | 0.10 | 0.96 | 1.19 | CNFpred | | SVVTGVGFLIHMYASW-YSRFFAYTNLFIASMVVLVL----DNLLLMYLGWEGVGLCSYLLIGAMKAFVVTRVGDVFLAFALFILYNEGTLNFREMVE-MLMWATLMLLGGAVGKSAQLPLQTWLADAMAGPTPVSALIHAATMVTAGVYLIAR---THGLFLMT--PEVLHLVGIVGAVTLLLAGFAALVQTDIKRVLAYSTMSQIGYMFLALGVQAWDAAIFHLMTHAFFKALLFLASGSVILACH |
3 | 3d19A | 0.07 | 0.07 | 0.94 | 1.00 | DEthreader | | --D-GVTSMERSLNEIRFWSRIMKEHSFFLRLGF--RCEDTQLIEEANQFYRLFEIEIAH-TNPIKRNAEVQQAATNIWGFKRKILGLIKLPGQNNFPLLVDHTSREADYFRKRLIQ-LNEGKLDA---D-AIIKENVFFLRIMADHAKFIG----HLLDPSERKLVDARNFSNDFDELMYQAIDLEKQLDFLDQNRVSVASLRDFKKTARDLIEQCKIKSIIHPLLADHVFREADRFLEIIDMYDVH |
4 | 4od4A | 0.09 | 0.08 | 0.88 | 0.65 | DisCoVER | | -VGALLSYPFLMAAAV-VGLRMAGMAY-NNIADLRTAKRPLVSLREAWALVAAGS-AIYFASA-ALLNTYALLLSPLV-LAIALTYPHA-KRLHPL-PHLHLGIVLGSVVFGGAVAASGDE-ASSLEVLR-SV-PWLYVAAVSLWVAGFD----------T--IYSIALAASLAMHA-AAVALFIAGVEA-YGLGAIATVSTALTALVIILVQA-MAWLGRVKESFNLNLAVPIIIGAGIIVDM---- |
5 | 4av3A | 0.08 | 0.07 | 0.87 | 1.00 | DEthreader | | ----Y--VAALFFLIPLVALGFAAANFAVAANRVEAARKIALAYGGSVMGLSVGGFALLGLVLVYLSYPIFFALVGLGCSMLGIYVIVKKPSNPQRELNISLWTSALLTVVLTALT-FYLKLQGLLGFRFISPFSAIIGISGILIGFWAEYTSYRYT-KTDHLDAVGNTTAAIGKGFAIGSAIFAALSLFASY---------------I-------DK-EKLVI-DTGDPLKDTVGPSLDILIKIMSV |
6 | 4od4A | 0.06 | 0.06 | 0.88 | 0.49 | CEthreader | | --------------LVRIEHTIFSLPFAYVGALLSRYPFTLADAILMAAAVVGLRMAGMAYNSLREAWALVAAGSAIYFASAALLN------------TYALLLSPLVLAIALTYPHAKRLHPL----PHLHLGIVLGSVVFGGAVAASGDEASSLGEVLRSVPWLYVAAVSLWVAGFDTIYSIMDIDFPALLGPKGALAASLAMHAAAVALFIAGVEAYGLGAIATVSTALTALVIILVQAMAWLGR |
7 | 3o0rB | 0.09 | 0.09 | 0.98 | 0.73 | EigenThreader | | IVALGFLFNVGMTVLRISMVLMTGLIGLALLFLFSFYNPENWWWVVHLWVEWELIMGAILAFVLVKITGLYVIIAMALISGIIGTGHHYFWLWLGSVFSALEPLPFFAMVLFAFNTINRRR---RDYPNRAVALWAMGTTVMAFLGAWGFMHTLAPVNYYTHQLTAAHGHMAFYGAYAMIVMTIISYAMPLEMWGFWLMTVAMVFITLFLSAAGVLQVWLQRMPFYWLREGAGVVFLIGLVAYLLSF- |
8 | 6u8yE | 0.14 | 0.10 | 0.69 | 0.31 | HHpred | | ----------------------------------------------------------------MLKRVLAILTILVIGYWLAQGLADVPMVVGKYYLEHVTVLFIASTGVAALLWKKKRERTAKTEGSVVLTTGARLLFPFIALFGMYIFIHG--------HLTPGGGF---PGGATIATAFLLYLAFIFEVTEGGMGYVITGLIGLAIGGYFFDWQTWHEGRLFSGGFIPIIYTLIGIKVGTEL-- |
9 | 4z3nA | 0.10 | 0.10 | 0.98 | 0.33 | MRFsearch | | --RAQRILSVGIIIALFFAIVITVLGYVYAQPLLRSLGATKSIIGYATEFYYYSLLTVFSIMLIGVIMKASLLGALVNIMLDPIMIFVFDFGVKGVALASFLAQLSMVAYFIYTLMG-SWKIYREFLSVGMAQMLMQLIIAVGIVIYNFFIVRLDVNAMAAFTLTGRIDYFIITPMLAIATALLTVVGQAYWAAVALAFSIVLVLAVMHIVLVVAVSDYAVLQTRIMALALPFVAISLLASEYYQAI- |
10 | 6i1rA | 0.09 | 0.09 | 0.95 | 0.96 | FFAS-3D | | --ALLTILTSSQGILTTLSLFKLSVSGFFLWKECRTSPSVRMTKERLYVVPSVIYLIHNNVQFYVDPSTYQIMGNLKIVTTGILFRLKRKLSNIQWMAI-----VLLAVGTTTSQVKGCGDSPCDSLFSYLLGILSACLSALAGVYTEYLMKKNNDSLYWQNVQLYTFGVIFTTWMVVFNLGSTGLLVSWLMKYSDNIVKVYSTSMAMLLTMVLSIYLFSVKATI----QLFLGIIICIISLQMYF-- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|