Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | NLHKLLPNHLMETLYSYKSEEDKKKCENPELSGLERILARHQLPKEINLTPKPNRMPPWKRKIINNVTDGWKKCHLLKRNMKEPPMSTIVVRWLKKNMQPTEDLKSVICRLSAFGPIQSVTVCGRQSAIVAFKDMTSACNAVSAFQSRTPGTMFQCSWQQRFMSKD |
1 | 2mzqA | 0.11 | 0.06 | 0.52 | 0.61 | DisCoVER | | -----------------------------------------TAA-KFTEGVNP--G----------------------------GDRNCFIYCSN--LPFSTARSDLFDLFGPIGKINNAELKPTGVAVVEYENLVDADFCIQLNNYNYGGCSLQISYARR----- |
2 | 3spaA | 0.04 | 0.03 | 0.74 | 0.83 | DEthreader | | ---------------------KLHLPLLAPNCAWFWL-PHNTYPLGSDRHNLTGAEQLACCMEVANAVRASD--P-AA-Y----SHLPVHQDGSNGLQHALDSMMLTALHCYRKGLTFVSV-H---DCYWTHADVSVMNQVCREQFVLEQVKSYFFS--------- |
3 | 4pkdB | 0.12 | 0.11 | 0.98 | 0.33 | CEthreader | | ELKKSLYAIFSLDILVSRSLKMRGQAYAKTDSDIIAKMKGTFVEETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDT----TESKLRREFEVYGPIKRIHMVYRGYAFIEYEHERDMHSAYKHADGKKDGRRVLVDVERGRTVKG |
4 | 2f3jA | 0.10 | 0.08 | 0.83 | 0.78 | EigenThreader | | ------------------------MADKMDMSLDDIIKLNRNQRRVNRGGGPRRPAIARGGRNRPAPYSRPKPLPDKWQHDLFETGAKLLVSNL----DFGVSDADIQELFAEFGTLKKAAVDSLGTADVHFERRADALKAMKQYKGVPLRPMDIQLVASQIDLEH |
5 | 2i38A | 0.17 | 0.14 | 0.81 | 0.61 | HHpred | | --------------KTLKGE---TTTEAVDAATAEKVFKQYANDNGVDGEWTYDDAT--KTFTVTEGSHHHHHHMH---RDSCPLDCKVYVG----NLGNNGNKTELERAFGYYGPLRSVWVAPPGFAFVEFEDPRDAADAVRDLDGRTCGCRVRVELSNG----- |
6 | 2vodB | 0.13 | 0.11 | 0.85 | 0.43 | MRFsearch | | --MAALEAKICHQIEYYFGDFLKEQIKLDDFNVIVEALSKSK-AELMEISSPSKPLPEVTDEYKNDV-----------------KNRSVYIKGF----PTDATLDDIKEWLEDKGQVLNIQMRRKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDYFAK- |
7 | 3r27A | 0.27 | 0.12 | 0.44 | 0.67 | FFAS-3D | | ---------------------------------------------------------------------------------KTPASPVVHIR----GLIDGVVEADLVEALQEFGPISYVVVMKKRQALVEFEDVLGACNAVNYAADNQAGHPAFVNY-------- |
8 | 3s01A | 0.10 | 0.10 | 0.97 | 0.78 | SPARKS-K | | GLDSKNCDRVFNVFCLYGNVEKKPGAADGYADRAITHLNNNFFQKNVCVSPAIPGQSYGLEDGSCSYKDRFSTPEQAAKNRIQHPSNVLHFFNAPLE----VTEENFFEICDELGRPTSVKVFRSSSGLLEWDSKSDALETLGFLPNGPYPYTLKLCFSTAQHAS- |
9 | 4p6qA | 0.16 | 0.07 | 0.46 | 0.94 | CNFpred | | -------------------------------------------------------------------------------------TRTLFIGNLE----KTTTYHDLRNIFQRFGEIVDIDIKKPQYAFLQYCDIASVCKAIKKMDGEYLNNRLKLGFGKSMPTNC |
10 | 5xamA | 0.08 | 0.07 | 0.84 | 0.83 | DEthreader | | LKPTVVEIP-GATVQDRARS----TPEEASQLALVLSGALPIVTAA-ERSIGLGAISG--P--------GALVGLNYG-DF--APGTTLTARV------DRQVTTQLRNSVIGAVTSATIRDTTGQNFTVKVPELNEVKQIGAAIGK-L-PQGQVLASETVGPAVG |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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