>PF14940 (249 residues) LRSYINNRPPLVIFMITVSALAIAFLTIGYFFKIKEIKSPELTEDWNTFLLRFNELDFCV SENETIKHGLNESTTPESMVVTSGQTRSSTQAPLLLEDSGPINISVPITLTLDPQRPFGG YSRNITHLYATALGQQLGLSGREAHEEINITFTLPVSWNSDDCVLHGHCEQVVFSTCMTI TASSNIFPVTVQPPHCVPETYTNATSWYKVFTTVRDSDTKYSQDYNPFWCYKGAIGKVYH ALNPKLTVI |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | LRSYINNRPPLVIFMITVSALAIAFLTIGYFFKIKEIKSPELTEDWNTFLLRFNELDFCVSENETIKHGLNESTTPESMVVTSGQTRSSTQAPLLLEDSGPINISVPITLTLDPQRPFGGYSRNITHLYATALGQQLGLSGREAHEEINITFTLPVSWNSDDCVLHGHCEQVVFSTCMTITASSNIFPVTVQPPHCVPETYTNATSWYKVFTTVRDSDTKYSQDYNPFWCYKGAIGKVYHALNPKLTVI | |||||||||||||||||||
1 | 2veoA | 0.10 | 0.07 | 0.73 | 0.81 | DisCoVER | -----------------A------AL--------------------------------NPYDFYTTPIGFAKGQVIQSRKVPTDIGNANNAASFQLQYRTTNAVADVATVWIPAKPAKIFSYVYELDCAPSYS-YLTGL---------DQPNKVTADTPIIIGWALQQGYYVVSSDHGFKMADGIRAKVALEVGASHGGTYPFLNVFPRFIWHAIPDEIVPYQPAFSPYPIAEHLTAEGSLWFIQAFT- | |||||||||||||
2 | 7bqxS | 0.08 | 0.05 | 0.64 | 0.67 | DEthreader | --HI-----TVLSVKLRHAPPMFILQTLADTFTVKSDL---------------------IVTDNVLRQLL-----PISAA-VI-KLGNH-AVAVES---MYYPLN--RMQYSYYFPVWIVNKNEILSENILFSSRAST---TGL--SSTMTPRVAITTDMGIHTQDFTCSPC------------------Y---------------MVEYSRGPATSNTQFVVIAGTDVF-----LEQPSFLQ------ | |||||||||||||
3 | 2plqA | 0.07 | 0.06 | 0.94 | 0.49 | CEthreader | RLHTKAEVIENAKKIADMVVGMKQGLPGMDLVVFPEYSTMGIMYDQDEMFATAASIPGEETAIFAEACKKADTWGVFSLTGEKHEDHPNKAPYNTLVLINNKGEIVQKYRKIIPWCPIEGWYPGDTTYVTEG------------PKGLKISLIVCDDGNYPEIWRDCAMK----GAELIVRCQGYMYPAKEQQIMMAKAMAWANNTYVAVANATGFDGVYSYFGHSAIIGFDGRTLGECGTEENGIQYA | |||||||||||||
4 | 2dq3A | 0.03 | 0.03 | 0.84 | 0.72 | EigenThreader | RNKLSKEIGKLKEEIDRLEEELRKVEEELKNTLLWIFEPKPHWEIGERLERALINFLDLHTKKGYLIGTGQLPKFEEDLYKCERDNLREAGAYGKDIRGIIRQDKVELVKIVHLPCTGDLGFSAAKTYDIEVWFP--------SQNKEISSCSNCEDFQARRFKDSKTGKFVHTLNGSGLAVGRTLAAILENYQQED------------GSVVV---------PEVLRDYVGTDVIRPE---------- | |||||||||||||
5 | 6wvgA | 0.17 | 0.04 | 0.26 | 0.37 | HHpred | --SIKENKSLLMSFFILLLIILLAEVTLAILLFVYEHSDNSTKAAWDSIQSF---LQCCGIAGTSDWTSG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
6 | 3jacA | 0.12 | 0.07 | 0.63 | 0.55 | MRFsearch | --VKYGMGGLIILFLIAIIWFPLLFMSLIR--------------------------------------------------------------SVVGVVNQPIDVTVTLKLGGY-EPLFTMSASPEDIVTAQIEGSSQELYNGTADITLRFTWNFQRD-----------GTVEYTNEKHTLELIPHLFPKYIRANPVKQLQPDEEEDYLGVRIQLRREQ---------VGSDFLEWWVIELQ-------- | |||||||||||||
7 | 3sokA | 0.10 | 0.06 | 0.59 | 0.45 | FFAS-3D | -------------FTLIELMIVVAIIGILAAFAIPAYNDYIARSQAAEGLTLADGLSDHLESGECKGDANPASGSLGNDDKGKYALATIDGDYNKDAKTADEKNGCKVVITYGQGTAGEKISKL--------------IVGK------KLVLDQFVNGS------------------YKYNEGETDLELKFIPNAVK---------------------------------------------------- | |||||||||||||
8 | 5a1uE | 0.11 | 0.10 | 0.91 | 0.63 | SPARKS-K | IYNRVVLEHEEVRAGAVSALAKFGAQSILVLLKRCVM-DDDNERDRATFYLNVLEQKQKALNAGYILNGLTVSIPGLETLEPSQPEKVAATQLAAVPELGPLFKS------SPEPVALTESETEYVICTKHTFSDHLVFQNDQTLENVTVQMEPTEAYEVLSYVPARSLPNQPGTCYTLVALPT------------EDPTAVACTFSCVMKFTVKDCDPNTGEIDEE---GYEDEYVLEDLEVTVADHI | |||||||||||||
9 | 2e1qA | 0.11 | 0.06 | 0.51 | 0.63 | CNFpred | --------EVFRGVLEQLRWFAKSVASVGGNIITAS------ISDLNPVFMASGKLTLVSR--------------GTRRTVQMDHTFFPGYRKTLLS---PEEILLSIEIPYSR---------EGEYFSAFKQASRRE-----DIAKVTSGMRVLFKP-----------TTEVQELALCYGGM------------------------------------------------------------------ | |||||||||||||
10 | 2i6qA | 0.03 | 0.02 | 0.66 | 0.67 | DEthreader | ----------------NTYAALNSVYHAIILLIYHFLGNMSASDQERTPWHVT--IKPKSQ---------------------------------------SDQWVLTAAHCFR------DG----NDHSLWRVN-VGDPKSQWGKEFLIEKAVISPGFDFAKKNQ--GILEFYDDIALLKLKVKMSHARPICAALRRGSTCRD------DQFLCSGT-QED---ESPVGYPPPRDFHINLFQL-LN--- | |||||||||||||
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |