Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80
| | | | |
| Seq | ARNTMHCDCGSKHARVPVESIRASEARYCKKCRVRHPAKHNDIWAETRCGGFWWVYYACLDGVVYDITQWATCPNNRLKHMKANSHAVQYRL |
1 | 1ii4A | 0.10 | 0.09 | 0.89 | 0.57 | DisCoVER | | KDPKRRIHPHIKLQLQAEERGVV--SIKGVSANRYLAMKDECFFFERLESNNYNTYRSRKYTSWYVAL-KR------TGQYKLGSKTGPAI- |
2 | 2jycA | 0.05 | 0.04 | 0.84 | 0.83 | DEthreader | | ---ISED--C-RMGAGIA-VLFKKFGGVQELL-NQ-QKKSGEVAVLKR-D-GRYIYYLITKPTLQ-SLEAMK---SHCGVDLSMPIGLWVME |
3 | 6htjA | 0.10 | 0.10 | 0.97 | 0.52 | CEthreader | | KLPFIQCNKCGHKFYYP---RVLCPKCGSSDIEVRFSKGLGKIFAMTKVGSYVIYGIVELEEGFRMYSNIIEESQADIRKVEVIFKEINGKK |
4 | 4fmkA | 0.10 | 0.10 | 1.00 | 0.65 | EigenThreader | | GTVELPCLRDATLAFRLRVEDEGNYTCEFATNGTRRGVTIAQPENHAIGPQSRCVSTGGRPPGTTIISRYSLVPVGRADGESFEEPSVRYHH |
5 | 1e0oA | 0.16 | 0.14 | 0.86 | 0.24 | HHpred | | -PKLLYCSNGGHFLRILP-DGTVDGTR------DRS-DQHIQLQLSAESVSTETGQYLAMDGLLYGSQTPNECLFL--ERLEENHYNT-YI- |
6 | 1x6mA | 0.29 | 0.11 | 0.37 | 0.68 | MRFsearch | | --GTLHCKCSTNPVRVAVRAQAHNHVCGCTKCWKPE-------------------------------------------------------- |
7 | 1mj4A | 0.28 | 0.08 | 0.27 | 0.25 | FFAS-3D | | ---------------------------------SSHTSPETGIW-------------VTLGSEVFDVTEFV--------------------- |
8 | 1yo4A | 0.16 | 0.14 | 0.86 | 0.87 | SPARKS-K | | -------GPELYHYQECVRG---TTVLLKEPCPPFHPLADNKFALTCTS---THFAFACADGTRHTYQLRARSVSPKLFIRQEEVQQELYSR |
9 | 3eswA | 0.09 | 0.07 | 0.73 | 0.67 | CNFpred | | --DVRYVWNREDHVWCEYFSNFLNRWVHVDSCEQSFDQ---PYIYSINWNKKMSYCIAFGKDGVVDVSKRYI-------------------- |
10 | 4ztkA | 0.04 | 0.03 | 0.87 | 0.83 | DEthreader | | LQVEITVQHAKSGVIAIADGN-PFFGFDG-NIPVSLSYLAGKTGTVIENN-DKYLALFAGYVLLVVIEG--YFSKKTLV---S----GGEAP |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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