Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | TQKAARQLDSVLSDLTRNFAEGTEYFKMLVDVFAPEFRSPKNMHLRNFYIIVPPLTLNFVEHSISCKEKLNKKNKSGAAFTDDGFAMGVAYILKLLDQYQEFDSLHWFQSVREKYVKEIRAVAKQQNVQSSNQDEKLLQTMNLTHKRLEVCLQEFELLYFSLSSARIFFR |
1 | 6qb5C | 0.10 | 0.08 | 0.86 | 1.00 | DEthreader | | ------L-KSAMQSVVDDW--SALDLINFFIQCSGYPLTMPWKFRSNFCEFIGVLIRQCQYSII-YD-----------EYMMDTVISLLTLSFRHTSTL-AMKLMTALVNVALNLSIHQDNTQRQYEAERNKA-NERLELLLQKRKELQENQDEIENMMNSIFKGIFHRD |
2 | 4uvkA1 | 0.08 | 0.07 | 0.89 | 1.00 | DEthreader | | ----D--R-VHDVHSNESSNETVGELQLLFQQHEFHLLISSYPLYANFVEFMFRLMDVANQLLYV-G---------TGPIIDLTWLSPLSSLRYIATLT-YLF-QDFLTDHVVDLDKYLSKLSKQLSVENKRPNGKTVEKLESTIAEIQSSKMVTQGIIDNIILCFVHRD |
3 | 6w2rA1 | 0.07 | 0.05 | 0.63 | 0.71 | DisCoVER | | G--TTEDERRELEKV----------ARKAIEAARE-G------NTDEVREQLQRALEIARESTKTAV-----------KLALDVALRVAQEAAKRGNKDA-IDEAEVVVRIAEES-------------------------------NNSDALEQALRVLEEIAKAVLKS- |
4 | 4uvkA1 | 0.10 | 0.08 | 0.85 | 1.00 | DEthreader | | ---------SIDELLRD-S--SDRFLQEFINLLLCCCGEFHLYLYANFVEFMFRLMDVANDLQLLYV------------GTGPLIIDLLWLSLSLIATLTLYLFQDFLTDHVVDLDKYLSKLSKQLSVENKRPNGKTVEKLESTIAEIQSSKMVTQGIIDNIIKLCF-R- |
5 | 2y44A | 0.08 | 0.07 | 0.86 | 0.57 | CEthreader | | ------------------KVEEVQTMCDVARQLRALE-----TASQSAVAAVVSSAREASEAKERAEKAVERAKAARAAAAAQRAETVVSDARKHAADRLLATEADEPIRTAAKKSKSLESAFDALAELLPDGADDIREHGAVFVKGLKSLEDDVRTAGEAKYEAEKAE- |
6 | 3ce2A | 0.05 | 0.05 | 1.00 | 0.60 | EigenThreader | | ANLLNGKIQAHVFYAKNKRYNSCLQAALYIDTLKQGLTTQGWHPYVLLNDVSVIAHEGGHSMHSYFSRKHQPFHDAQYPLAEIASTLNEMLLMDSMLKESLTRCLDTIFSTLQVLFASFEYDIHHAAEHGVPLTEEYLSSTYKNLQNEFYGYQYATGIIAALCFLEKILN |
7 | 2pffB | 0.20 | 0.18 | 0.88 | 0.36 | HHpred | | --SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL-----VKTKELIKNYITARIMAKRPFDKKSNLVAIFTDDYFEE-----LRDLYQT-----YHVLVGDLIKFSETLSELIRTTLDPSNTPDKDYLLSIPISCPLIAHYVVTAKLLGFTPGELR---- |
8 | 6h7wB | 0.12 | 0.11 | 0.95 | 0.50 | MRFsearch | | --NQLKALLKAMDNMVAQRKAMAEAAADFSASLHALSTVELSPTLSGPLDALSELQLAIRDVYERQAQQDVLT----FGIIIEEYIRLIGSVKQAFSQRQK--AFHSWHSAESELMKKKAAQDKLLRQGKTQQDNQVNAEVIDAERKVHQARLLFEDMGRLLRSELDRFE |
9 | 4fzsA | 0.14 | 0.14 | 0.96 | 0.75 | FFAS-3D | | -EQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALS----QLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRM--KTWQRWQDAQATLQKKREAEARLLWANKPDKLQQAKDEILEWESRVTQYERDFERISTVVRKEVIRFE |
10 | 6w2qA | 0.11 | 0.11 | 0.96 | 0.71 | SPARKS-K | | LKRAEELLKEAVRLAEEVVRERSEAAKKALEIIQEAAESPDPEAIIAAARALLKIAATTAKQAIEAASKAAQLQRGDDELVCEALALLIAAQVLLLKQQGT-SDEEVAEHVARTISQLVQRLKRKG-----ASYEVIKECVQRIVEEIVEALKRINEIVRRVKSEVERTL |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|